Wall clock time and date at job start Mon Mar 30 2020 20:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99813 * 2 1 4 4 H 1.48499 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47147 * 299.99912 * 3 2 1 6 6 H 1.48494 * 109.47695 * 60.00078 * 3 2 1 7 7 C 1.37878 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99584 * 175.17540 * 7 2 1 9 9 C 1.50698 * 119.99728 * 355.17640 * 7 2 1 10 10 H 1.08997 * 109.47095 * 35.25127 * 9 7 2 11 11 N 1.46896 * 109.47101 * 275.24309 * 9 7 2 12 12 C 1.53006 * 109.46666 * 155.24769 * 9 7 2 13 13 H 1.08998 * 109.39157 * 60.19591 * 12 9 7 14 14 C 1.52578 * 109.38674 * 179.97438 * 12 9 7 15 15 C 1.52584 * 110.72604 * 190.82258 * 14 12 9 16 16 C 1.53100 * 109.95331 * 289.32367 * 15 14 12 17 17 S 1.81749 * 108.84092 * 63.02726 * 16 15 14 18 18 C 1.53093 * 109.38942 * 300.49098 * 12 9 7 19 19 H 0.96994 * 120.00188 * 185.16799 * 1 2 3 20 20 H 1.00899 * 111.00235 * 295.10366 * 11 9 7 21 21 H 1.00905 * 111.00013 * 59.05686 * 11 9 7 22 22 H 1.09002 * 109.22778 * 311.14614 * 14 12 9 23 23 H 1.09000 * 109.22978 * 70.54537 * 14 12 9 24 24 H 1.08993 * 109.38873 * 49.47285 * 15 14 12 25 25 H 1.09004 * 109.39200 * 169.27859 * 15 14 12 26 26 H 1.09000 * 109.57129 * 182.82861 * 16 15 14 27 27 H 1.08999 * 109.57900 * 303.08463 * 16 15 14 28 28 H 1.09002 * 109.57983 * 296.64163 * 18 12 9 29 29 H 1.08999 * 109.58053 * 57.02286 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0817 -1.1956 -0.0781 9 6 1.2550 -2.4968 0.1109 10 1 0.3057 -2.4156 -0.4184 11 7 1.0025 -2.7980 1.5262 12 6 2.0899 -3.6194 -0.5084 13 1 3.0375 -3.7017 0.0240 14 6 1.3297 -4.9375 -0.3952 15 6 2.2321 -6.1140 -0.7554 16 6 2.5221 -6.1089 -2.2587 17 16 3.4321 -4.5919 -2.6758 18 6 2.3624 -3.2976 -1.9802 19 1 -0.4850 -0.8366 0.0757 20 1 1.8669 -2.9569 2.0219 21 1 0.4655 -2.0633 1.9621 22 1 0.9724 -5.0591 0.6274 23 1 0.4768 -4.9194 -1.0736 24 1 3.1697 -6.0325 -0.2057 25 1 1.7353 -7.0465 -0.4874 26 1 3.1252 -6.9792 -2.5172 27 1 1.5834 -6.1377 -2.8119 28 1 1.4207 -3.2689 -2.5282 29 1 2.8611 -2.3314 -2.0565 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260625043.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:17 Heat of formation + Delta-G solvation = -48.358926 kcal Electronic energy + Delta-G solvation = -11519.732364 eV Core-core repulsion = 9566.749693 eV Total energy + Delta-G solvation = -1952.982671 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.00897 -35.91445 -33.41595 -31.77791 -28.15555 -27.14734 -24.81091 -22.61187 -21.13485 -18.90430 -17.57991 -16.88965 -15.77766 -15.64823 -15.47881 -15.08916 -14.49305 -14.27183 -14.03392 -13.64708 -13.23706 -12.72717 -12.59603 -12.24381 -12.08412 -12.00160 -11.76550 -11.41046 -10.94415 -10.58945 -10.53948 -9.23585 -8.68956 -8.58667 -6.38318 0.86883 1.50105 1.55878 1.60903 1.72887 2.51205 3.14485 3.76168 3.88993 3.97742 4.05404 4.31265 4.35819 4.48365 4.59773 4.75178 4.85172 4.90703 5.08367 5.14158 5.24020 5.45996 5.53461 5.95676 6.10448 6.55806 6.61314 6.86064 7.42071 8.73786 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.046704 B = 0.010803 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.370553 B = 2591.343566 C = 2981.494294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.019 4.019 3 Si 1.110 2.890 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.629 4.629 8 H 0.039 0.961 9 C 0.200 3.800 10 H 0.011 0.989 11 N -0.839 5.839 12 C -0.056 4.056 13 H 0.056 0.944 14 C -0.115 4.115 15 C -0.113 4.113 16 C -0.069 4.069 17 S -0.313 6.313 18 C -0.045 4.045 19 H 0.261 0.739 20 H 0.326 0.674 21 H 0.323 0.677 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 -10.101 -1.733 11.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.219 4.219 3 Si 0.934 3.066 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.669 4.669 8 H 0.057 0.943 9 C 0.088 3.912 10 H 0.029 0.971 11 N -0.364 5.364 12 C -0.076 4.076 13 H 0.074 0.926 14 C -0.152 4.152 15 C -0.152 4.152 16 C -0.216 4.216 17 S -0.086 6.086 18 C -0.194 4.194 19 H 0.072 0.928 20 H 0.137 0.863 21 H 0.133 0.867 22 H 0.096 0.904 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.732 -9.048 -2.675 10.556 hybrid contribution -0.597 -0.435 0.776 1.072 sum 4.135 -9.484 -1.899 10.519 Atomic orbital electron populations 1.70872 1.07661 1.30592 1.48070 1.27002 0.96490 1.05917 0.92522 0.82997 0.74199 0.72110 0.77324 1.20272 1.20959 1.20603 1.22910 0.94643 0.94217 1.55161 0.94252 1.19038 0.93619 0.91441 0.87074 0.97115 1.59468 1.23591 1.48813 1.04548 1.21040 0.98482 0.95151 0.92969 0.92570 1.21488 0.97688 0.93357 1.02686 1.21695 1.00556 0.99058 0.93854 1.23523 1.02729 0.95785 0.99601 1.86612 1.39210 1.05351 1.77472 1.23248 0.99859 0.98059 0.98239 0.92839 0.86340 0.86742 0.90351 0.93560 0.91235 0.88581 0.85793 0.89564 0.91825 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 13.63 21.45 0.29 -54.37 15 2 C -0.02 -1.04 5.45 84.66 0.46 -0.58 15 3 Si 1.11 49.47 29.91 68.60 2.05 51.52 15 4 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 7 C -0.63 -33.28 7.29 25.60 0.19 -33.10 15 8 H 0.04 2.13 7.73 -2.91 -0.02 2.11 15 9 C 0.20 9.45 2.06 44.17 0.09 9.54 15 10 H 0.01 0.58 6.67 -2.39 -0.02 0.57 15 11 N -0.84 -36.19 8.29 -171.80 -1.42 -37.62 15 12 C -0.06 -2.21 1.72 -10.90 -0.02 -2.23 15 13 H 0.06 2.32 8.05 -2.39 -0.02 2.30 15 14 C -0.11 -3.77 4.89 30.32 0.15 -3.62 15 15 C -0.11 -2.87 5.75 30.49 0.18 -2.69 15 16 C -0.07 -1.70 6.45 72.02 0.46 -1.24 15 17 S -0.31 -10.39 22.33 -56.49 -1.26 -11.65 15 18 C -0.05 -1.80 5.53 72.01 0.40 -1.41 15 19 H 0.26 15.42 6.66 -92.71 -0.62 14.80 15 20 H 0.33 13.19 8.97 -89.69 -0.80 12.38 15 21 H 0.32 14.88 9.02 -89.69 -0.81 14.08 15 22 H 0.08 2.67 7.25 -2.39 -0.02 2.65 15 23 H 0.05 1.56 8.08 -2.39 -0.02 1.54 15 24 H 0.07 1.83 8.05 -2.39 -0.02 1.81 15 25 H 0.10 1.92 8.14 -2.38 -0.02 1.90 15 26 H 0.12 2.43 8.14 -2.39 -0.02 2.41 15 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 28 H 0.06 2.57 8.14 -2.39 -0.02 2.55 15 29 H 0.09 3.92 7.04 -2.39 -0.02 3.91 15 Total: -1.00 -57.82 244.74 1.25 -56.58 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.32 Total: 30.85 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 1.91 Total: -35.32 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -1.13 Total: -91.98 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Atomic # 16 Polarization: -10.39 SS G_CDS: -1.26 Total: -11.65 kcal Total: -57.82 1.25 -56.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625043.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.218 kcal (2) G-P(sol) polarization free energy of solvation -57.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds