Wall clock time and date at job start Mon Mar 30 2020 20:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.38995 * 54.99991 * 10 9 7 12 12 C 1.53092 * 109.38903 * 295.19974 * 10 9 7 13 13 S 1.81758 * 108.83626 * 176.74607 * 12 10 9 14 14 C 1.81750 * 102.15964 * 53.39653 * 13 12 10 15 15 C 1.53093 * 108.84292 * 306.68705 * 14 13 12 16 16 C 1.52578 * 109.39040 * 174.79953 * 10 9 7 17 17 H 1.08992 * 109.23205 * 311.10323 * 16 10 9 18 18 N 1.46901 * 109.22604 * 70.50598 * 16 10 9 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.09001 * 109.57801 * 296.63236 * 12 10 9 23 23 H 1.08995 * 109.57724 * 57.01797 * 12 10 9 24 24 H 1.09004 * 109.57414 * 186.88101 * 14 13 12 25 25 H 1.09004 * 109.68019 * 66.56407 * 14 13 12 26 26 H 1.08998 * 109.39064 * 302.87592 * 15 14 13 27 27 H 1.08991 * 109.39329 * 183.17195 * 15 14 13 28 28 H 1.00897 * 111.00510 * 179.97438 * 18 16 10 29 29 H 1.00908 * 110.99888 * 303.95364 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9286 -3.5540 0.8417 12 6 3.0429 -3.6489 -1.3072 13 16 4.2840 -4.9756 -1.2506 14 6 3.2705 -6.4312 -0.8540 15 6 2.4458 -6.1326 0.4007 16 6 1.4850 -4.9785 0.1299 17 1 0.7748 -4.9029 0.9532 18 7 0.7538 -5.2405 -1.1170 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.3691 -3.8131 -2.1481 23 1 3.5430 -2.6871 -1.4201 24 1 3.9185 -7.2882 -0.6697 25 1 2.6022 -6.6511 -1.6866 26 1 3.1148 -5.8623 1.2177 27 1 1.8767 -7.0194 0.6794 28 1 0.2405 -6.1073 -1.0600 29 1 0.1414 -4.4716 -1.3454 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260687145.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:21 Heat of formation + Delta-G solvation = -22.657929 kcal Electronic energy + Delta-G solvation = -11468.952797 eV Core-core repulsion = 9517.084605 eV Total energy + Delta-G solvation = -1951.868192 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.85816 -33.44469 -31.46183 -30.61464 -26.98710 -25.77783 -23.53014 -20.97057 -18.67274 -16.55777 -15.98066 -15.41116 -15.24558 -14.45118 -13.54419 -13.38870 -12.91810 -12.50036 -12.12470 -11.96132 -11.58408 -11.15063 -11.03452 -10.85045 -10.79538 -10.22833 -10.00763 -9.51065 -9.02209 -8.87619 -8.41645 -8.32737 -7.09856 -6.05175 -4.07190 2.45228 3.20047 3.32135 3.36310 3.39504 4.42919 4.85797 5.16187 5.26255 5.31171 5.41189 5.70444 5.81725 5.87538 5.99909 6.22275 6.29092 6.41773 6.69173 6.85380 6.93762 7.47642 7.55615 7.69154 7.81582 7.92644 8.35577 8.98268 9.57348 11.05941 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.050575 B = 0.010022 C = 0.008876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.505202 B = 2793.211040 C = 3153.696454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.077 4.077 11 H 0.070 0.930 12 C -0.036 4.036 13 S -0.315 6.315 14 C -0.061 4.061 15 C -0.114 4.114 16 C 0.085 3.915 17 H 0.038 0.962 18 N -0.845 5.845 19 H 0.261 0.739 20 H 0.015 0.985 21 H 0.019 0.981 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.329 0.671 29 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -10.473 -0.670 10.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.098 4.098 11 H 0.088 0.912 12 C -0.183 4.183 13 S -0.088 6.088 14 C -0.210 4.210 15 C -0.154 4.154 16 C -0.027 4.027 17 H 0.056 0.944 18 N -0.376 5.376 19 H 0.071 0.929 20 H 0.034 0.966 21 H 0.038 0.962 22 H 0.106 0.894 23 H 0.121 0.879 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.171 -10.314 -1.200 11.190 hybrid contribution -1.762 0.952 0.828 2.167 sum 2.409 -9.362 -0.371 9.674 Atomic orbital electron populations 1.69942 1.06066 1.26783 1.50709 1.25003 0.94820 0.99251 0.95193 0.86669 0.79612 0.83110 0.78736 1.21328 1.20209 1.20154 1.21180 0.93023 0.90815 1.50749 0.92506 1.19158 0.93424 0.91032 0.97097 1.21450 0.97985 0.94141 0.96204 0.91160 1.23381 0.97078 0.96346 1.01517 1.86488 1.21068 1.07414 1.93811 1.23122 1.00074 0.96674 1.01104 1.21768 0.98175 0.98083 0.97342 1.21391 0.95119 0.95375 0.90773 0.94445 1.58886 1.35511 1.07780 1.35411 0.92936 0.96648 0.96241 0.89388 0.87878 0.89775 0.89003 0.90806 0.92178 0.85970 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.29 55.43 0.74 -25.48 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 15 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.52 -14.15 8.36 -34.44 -0.29 -14.43 15 8 H 0.06 1.52 7.05 -52.49 -0.37 1.15 15 9 C 0.03 0.77 4.17 -27.89 -0.12 0.65 15 10 C -0.08 -1.54 1.81 -90.79 -0.16 -1.71 15 11 H 0.07 1.48 8.06 -51.93 -0.42 1.06 15 12 C -0.04 -0.70 5.37 37.21 0.20 -0.50 15 13 S -0.31 -5.53 22.33 -107.50 -2.40 -7.93 15 14 C -0.06 -0.88 6.24 37.21 0.23 -0.65 15 15 C -0.11 -1.62 5.49 -26.89 -0.15 -1.76 15 16 C 0.08 1.39 2.92 -68.14 -0.20 1.19 15 17 H 0.04 0.64 8.05 -51.93 -0.42 0.22 15 18 N -0.84 -12.61 6.75 -5.03 -0.03 -12.65 15 19 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 20 H 0.02 0.40 8.09 -51.92 -0.42 -0.02 15 21 H 0.02 0.49 7.03 -51.93 -0.36 0.13 15 22 H 0.09 1.74 7.25 -51.93 -0.38 1.36 15 23 H 0.10 2.20 6.86 -51.93 -0.36 1.85 15 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.09 1.32 7.27 -51.93 -0.38 0.95 15 26 H 0.07 1.08 8.06 -51.93 -0.42 0.66 15 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.33 4.05 9.02 -39.29 -0.35 3.70 15 29 H 0.35 5.67 7.59 -39.29 -0.30 5.37 15 LS Contribution 241.95 15.07 3.65 3.65 Total: -1.00 -28.33 241.95 -7.81 -36.14 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.15 Total: 5.51 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -0.58 Total: -15.66 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.70 Total: -38.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -5.53 SS G_CDS: -2.40 Total: -7.93 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.33 -7.81 -36.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260687145.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.477 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds