Wall clock time and date at job start Mon Mar 30 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47191 * 2 1 4 4 C 1.46902 * 110.99987 * 184.83273 * 3 2 1 5 5 C 1.50698 * 108.70821 * 53.49050 * 4 3 2 6 6 H 1.07999 * 120.00168 * 266.13641 * 5 4 3 7 7 C 1.37878 * 119.99984 * 86.14350 * 5 4 3 8 8 N 1.31517 * 120.00065 * 170.99922 * 7 5 4 9 9 Si 1.86799 * 119.99796 * 350.99680 * 7 5 4 10 10 H 1.48495 * 109.47236 * 95.70627 * 9 7 5 11 11 H 1.48507 * 109.47059 * 215.70271 * 9 7 5 12 12 H 1.48501 * 109.47070 * 335.70136 * 9 7 5 13 13 C 1.52816 * 108.96216 * 172.22993 * 4 3 2 14 14 C 1.54258 * 112.66493 * 120.68560 * 13 4 3 15 15 S 1.83950 * 102.57967 * 335.48206 * 14 13 4 16 16 C 1.54260 * 108.86854 * 295.03177 * 4 3 2 17 17 H 1.08998 * 109.46789 * 55.05710 * 1 2 3 18 18 H 1.09000 * 109.46975 * 175.05096 * 1 2 3 19 19 H 1.08998 * 109.46948 * 295.05220 * 1 2 3 20 20 H 1.09007 * 109.47076 * 240.00009 * 2 1 3 21 21 H 1.09006 * 109.47024 * 120.00128 * 2 1 3 22 22 H 1.00896 * 111.00055 * 308.78419 * 3 2 1 23 23 H 0.96996 * 119.99834 * 179.97438 * 8 7 5 24 24 H 1.09001 * 108.81880 * 359.84556 * 13 4 3 25 25 H 1.09008 * 108.83557 * 241.53202 * 13 4 3 26 26 H 1.09001 * 110.78687 * 217.20916 * 14 13 4 27 27 H 1.09004 * 110.78822 * 93.75917 * 14 13 4 28 28 H 1.08990 * 110.79192 * 145.43981 * 16 4 3 29 29 H 1.09000 * 110.78732 * 22.16674 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4836 1.4258 -0.1155 5 6 3.8958 0.6228 -1.3224 6 1 4.1671 -0.4167 -1.2124 7 6 3.9266 1.2154 -2.5669 8 7 4.4518 0.5739 -3.5879 9 14 3.2222 2.9294 -2.8030 10 1 4.3144 3.9309 -2.7068 11 1 2.5823 3.0218 -4.1399 12 1 2.2101 3.1979 -1.7501 13 6 3.9264 2.8759 -0.3061 14 6 4.8839 3.3557 0.8041 15 16 4.4603 2.2437 2.2068 16 6 4.1015 0.7853 1.1445 17 1 -0.3633 0.5886 -0.8424 18 1 -0.3633 -1.0238 -0.0887 19 1 -0.3633 0.4352 0.9310 20 1 1.8934 -0.5139 -0.8900 21 1 1.8933 -0.5139 0.8900 22 1 1.5839 1.9226 -0.7343 23 1 4.4731 0.9907 -4.4635 24 1 3.0437 3.5153 -0.3110 25 1 4.4294 2.9667 -1.2689 26 1 4.6866 4.3962 1.0621 27 1 5.9231 3.2210 0.5037 28 1 5.0192 0.2519 0.8970 29 1 3.3878 0.1196 1.6297 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260814361.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:26 Heat of formation + Delta-G solvation = 1.243101 kcal Electronic energy + Delta-G solvation = -11905.881838 eV Core-core repulsion = 9955.050072 eV Total energy + Delta-G solvation = -1950.831766 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.51454 -34.91978 -34.11407 -31.00952 -29.06146 -27.73590 -24.97968 -22.59309 -21.27716 -18.53265 -17.46057 -17.22333 -16.48851 -15.82122 -15.24611 -14.94755 -14.76839 -14.32275 -13.72677 -13.49602 -13.03830 -12.80407 -12.58844 -12.41149 -12.33339 -11.97444 -11.70595 -11.46594 -11.08329 -10.77698 -10.61251 -8.97455 -8.57204 -8.37989 -6.44703 1.08994 1.25309 1.29641 1.39885 1.47715 2.20524 2.91133 3.56621 3.77848 4.07924 4.13503 4.34785 4.41913 4.55882 4.60951 4.72957 4.74375 4.84617 4.97596 5.04739 5.23517 5.30524 5.39658 5.53784 6.06855 6.49466 6.57417 6.73565 7.21469 8.76654 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.026618 B = 0.019771 C = 0.014340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.661782 B = 1415.852240 C = 1952.170410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.055 3.945 3 N -0.678 5.678 4 C 0.206 3.794 5 C -0.536 4.536 6 H 0.032 0.968 7 C 0.016 3.984 8 N -0.937 5.937 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.313 1.313 12 H -0.219 1.219 13 C -0.147 4.147 14 C -0.047 4.047 15 S -0.325 6.325 16 C -0.025 4.025 17 H 0.048 0.952 18 H 0.067 0.933 19 H 0.065 0.935 20 H 0.017 0.983 21 H 0.060 0.940 22 H 0.327 0.673 23 H 0.266 0.734 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.124 0.876 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 5.060 6.818 9.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.311 5.311 4 C 0.114 3.886 5 C -0.577 4.577 6 H 0.051 0.949 7 C -0.183 4.183 8 N -0.576 5.576 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.243 1.243 12 H -0.143 1.143 13 C -0.185 4.185 14 C -0.195 4.195 15 S -0.098 6.098 16 C -0.174 4.174 17 H 0.067 0.933 18 H 0.086 0.914 19 H 0.084 0.916 20 H 0.036 0.964 21 H 0.078 0.922 22 H 0.147 0.853 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.270 5.275 8.591 10.948 hybrid contribution 0.342 -0.258 -2.909 2.940 sum -3.927 5.017 5.682 8.537 Atomic orbital electron populations 1.21721 0.94029 1.01916 1.01981 1.21797 0.95487 0.90578 0.99564 1.61343 1.05930 1.12354 1.51475 1.19307 0.87018 0.90841 0.91401 1.21640 1.46179 0.97561 0.92309 0.94921 1.26038 0.94386 1.02237 0.95601 1.70074 1.44894 1.40926 1.01711 0.86147 0.79763 0.79652 0.76612 1.20201 1.24298 1.14266 1.22882 0.99765 0.97352 0.98540 1.24067 1.01766 1.01209 0.92484 1.87297 1.90237 1.14230 1.18075 1.24154 1.02340 0.95928 0.94981 0.93333 0.91423 0.91626 0.96426 0.92182 0.85330 0.92512 0.89350 0.92039 0.85764 0.89257 0.91062 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 10.13 71.98 0.73 -3.37 15 2 C 0.06 2.08 5.78 86.30 0.50 2.58 15 3 N -0.68 -26.92 5.99 -472.06 -2.83 -29.75 15 4 C 0.21 8.85 0.59 3.15 0.00 8.85 15 5 C -0.54 -28.30 6.70 25.60 0.17 -28.12 15 6 H 0.03 1.96 8.04 -2.91 -0.02 1.94 15 7 C 0.02 0.89 5.23 84.65 0.44 1.33 15 8 N -0.94 -55.98 13.96 21.45 0.30 -55.68 15 9 Si 0.95 41.49 23.04 68.60 1.58 43.07 15 10 H -0.27 -11.55 6.80 99.48 0.68 -10.87 15 11 H -0.31 -14.22 7.11 99.48 0.71 -13.51 15 12 H -0.22 -8.35 3.91 99.48 0.39 -7.96 15 13 C -0.15 -5.79 3.54 30.96 0.11 -5.68 15 14 C -0.05 -1.58 7.46 72.41 0.54 -1.04 15 15 S -0.32 -11.72 23.27 -56.49 -1.31 -13.04 15 16 C -0.03 -1.02 6.33 72.41 0.46 -0.57 15 17 H 0.05 1.42 8.12 -2.39 -0.02 1.40 15 18 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 19 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 20 H 0.02 0.78 6.67 -2.38 -0.02 0.77 15 21 H 0.06 2.18 6.31 -2.38 -0.02 2.17 15 22 H 0.33 13.02 5.72 -89.70 -0.51 12.50 15 23 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 24 H 0.09 3.25 5.85 -2.39 -0.01 3.23 15 25 H 0.06 2.66 3.11 -2.38 -0.01 2.65 15 26 H 0.12 3.38 8.14 -2.39 -0.02 3.36 15 27 H 0.09 2.90 8.14 -2.38 -0.02 2.88 15 28 H 0.07 3.02 7.85 -2.39 -0.02 3.00 15 29 H 0.10 3.84 6.01 -2.39 -0.01 3.83 15 Total: -1.00 -59.30 228.40 0.97 -58.33 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.28 Total: 23.10 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 2.95 Total: -26.03 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -2.53 Total: -85.43 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.58 Total: 43.07 kcal Atomic # 16 Polarization: -11.72 SS G_CDS: -1.31 Total: -13.04 kcal Total: -59.30 0.97 -58.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814361.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.577 kcal (2) G-P(sol) polarization free energy of solvation -59.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds