Wall clock time and date at job start Mon Mar 30 2020 20:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46890 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99537 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46946 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.50141 * 54.99966 * 12 11 10 14 14 C 1.53090 * 109.50550 * 175.08700 * 12 11 10 15 15 N 1.47022 * 109.25638 * 176.74170 * 14 12 11 16 16 C 1.47015 * 110.78623 * 301.45080 * 15 14 12 17 17 C 1.53102 * 109.26026 * 58.59114 * 16 15 14 18 18 O 1.43008 * 109.50784 * 294.91529 * 12 11 10 19 19 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 21 21 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 22 22 H 1.08996 * 109.47036 * 299.99654 * 11 10 9 23 23 H 1.08997 * 109.47173 * 60.00425 * 11 10 9 24 24 H 1.09004 * 109.50530 * 296.71747 * 14 12 11 25 25 H 1.08994 * 109.51305 * 56.84857 * 14 12 11 26 26 H 1.00905 * 110.96145 * 65.22424 * 15 14 12 27 27 H 1.08999 * 109.50829 * 298.65595 * 16 15 14 28 28 H 1.08996 * 109.50411 * 178.52573 * 16 15 14 29 29 H 1.09000 * 109.50594 * 183.21589 * 17 16 15 30 30 H 1.08999 * 109.50391 * 63.08210 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5652 -4.8754 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 1 3.3221 -5.7965 0.8400 14 6 1.9945 -7.3350 0.1213 15 7 3.0328 -8.3728 0.0416 16 6 3.7716 -8.2755 -1.2257 17 6 4.4077 -6.8871 -1.3341 18 8 3.3873 -5.8910 -1.2243 19 1 -0.4849 -0.8401 0.0004 20 1 0.6248 -2.5571 0.8897 21 1 0.6241 -2.5567 -0.8903 22 1 0.9448 -4.9827 0.8886 23 1 0.9454 -4.9822 -0.8914 24 1 1.4779 -7.4088 1.0783 25 1 1.2800 -7.4729 -0.6903 26 1 3.6594 -8.3178 0.8306 27 1 3.0861 -8.4278 -2.0593 28 1 4.5518 -9.0362 -1.2515 29 1 4.9086 -6.7904 -2.2974 30 1 5.1328 -6.7553 -0.5311 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165354.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:53 Heat of formation + Delta-G solvation = -99.155828 kcal Electronic energy + Delta-G solvation = -13055.871335 eV Core-core repulsion = 10657.933073 eV Total energy + Delta-G solvation = -2397.938261 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.61141 -36.72176 -34.48973 -33.10865 -31.83887 -27.82462 -26.32906 -24.56573 -22.55294 -22.31531 -21.00741 -17.01207 -16.54992 -16.46671 -15.90537 -15.10636 -14.88987 -14.46315 -14.24017 -13.71044 -12.99807 -12.70282 -12.11492 -11.91065 -11.64578 -11.40788 -11.21668 -11.10120 -10.70882 -10.37982 -10.10118 -9.96942 -8.88275 -8.65669 -8.37311 -8.24737 -6.46360 -4.14626 3.42948 3.47788 3.64430 3.78602 3.98928 4.34102 4.55277 4.79872 4.94046 5.08256 5.09766 5.24514 5.31779 5.49996 5.57361 5.62982 5.73591 5.84745 5.92087 6.10033 6.61853 6.74250 7.05562 7.12085 7.26171 7.88398 8.17631 8.63994 8.81024 9.55899 10.94049 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.075563 B = 0.006429 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.461439 B = 4354.049413 C = 4602.180816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.082 2.918 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.596 4.596 8 H 0.061 0.939 9 C 0.185 3.815 10 O -0.381 6.381 11 C 0.071 3.929 12 C 0.058 3.942 13 H 0.063 0.937 14 C 0.028 3.972 15 N -0.682 5.682 16 C 0.019 3.981 17 C 0.020 3.980 18 O -0.362 6.362 19 H 0.267 0.733 20 H -0.005 1.005 21 H -0.003 1.003 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.341 0.659 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 -14.894 -0.197 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.910 3.090 4 H -0.212 1.212 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.634 4.634 8 H 0.079 0.921 9 C 0.111 3.889 10 O -0.300 6.300 11 C -0.008 4.008 12 C -0.002 4.002 13 H 0.081 0.919 14 C -0.102 4.102 15 N -0.311 5.311 16 C -0.111 4.111 17 C -0.059 4.059 18 O -0.280 6.280 19 H 0.077 0.923 20 H 0.013 0.987 21 H 0.014 0.986 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.158 0.842 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.362 -13.589 -0.578 14.620 hybrid contribution 0.473 -1.182 0.353 1.321 sum 5.836 -14.771 -0.225 15.883 Atomic orbital electron populations 1.70774 1.06828 1.30424 1.46758 1.25956 0.96423 1.02707 0.93563 0.83358 0.74590 0.74205 0.76888 1.21240 1.20799 1.21226 1.21932 0.95494 0.90381 1.55597 0.92114 1.20313 0.89425 0.85050 0.94144 1.87942 1.34590 1.12387 1.95065 1.22206 0.93386 0.85255 0.99912 1.22856 0.94302 0.95155 0.87893 0.91893 1.22634 0.95112 0.88566 1.03926 1.60936 1.17073 1.48483 1.04565 1.22703 0.98484 0.96553 0.93368 1.23263 0.90719 0.89163 1.02774 1.88226 1.48682 1.52901 1.38226 0.92306 0.98725 0.98576 0.92847 0.93553 0.89316 0.89678 0.84213 0.89885 0.89728 0.88436 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.42 13.65 55.43 0.76 -27.67 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 3 Si 1.08 26.00 29.90 -169.99 -5.08 20.92 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.60 -18.33 9.43 -34.44 -0.32 -18.65 16 8 H 0.06 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.19 5.24 5.00 36.01 0.18 5.42 16 10 O -0.38 -9.80 10.29 -39.86 -0.41 -10.21 16 11 C 0.07 1.37 5.60 37.16 0.21 1.58 16 12 C 0.06 0.93 3.08 -26.68 -0.08 0.85 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.03 0.34 6.05 -3.71 -0.02 0.32 16 15 N -0.68 -7.52 6.93 -113.49 -0.79 -8.31 16 16 C 0.02 0.19 6.77 -3.71 -0.03 0.17 16 17 C 0.02 0.24 7.01 37.21 0.26 0.50 16 18 O -0.36 -6.38 10.44 -39.86 -0.42 -6.80 16 19 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 20 H 0.00 -0.14 8.01 -51.93 -0.42 -0.55 16 21 H 0.00 -0.10 8.01 -51.93 -0.42 -0.52 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.34 3.28 8.89 -39.29 -0.35 2.93 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 254.15 15.07 3.83 3.83 Total: -1.00 -34.11 254.15 -6.50 -40.61 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.49 Total: -2.96 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.10 Total: -9.41 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.03 Total: -35.97 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.83 Total: -17.01 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.92 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.11 -6.50 -40.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165354.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.544 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds