Wall clock time and date at job start Mon Mar 30 2020 20:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.39108 * 2 1 4 4 S 1.83118 * 110.30857 * 237.91014 * 2 1 3 5 5 C 1.83997 * 95.85194 * 221.41764 * 4 2 1 6 6 C 1.55152 * 100.90461 * 35.28586 * 5 4 2 7 7 C 1.52941 * 108.96416 * 318.56247 * 6 5 4 8 8 C 1.50700 * 108.88547 * 150.89641 * 7 6 5 9 9 H 1.07995 * 120.00196 * 126.09787 * 8 7 6 10 10 C 1.37878 * 120.00175 * 306.09276 * 8 7 6 11 11 N 1.31510 * 120.00475 * 201.95565 * 10 8 7 12 12 Si 1.86804 * 119.99525 * 21.96303 * 10 8 7 13 13 H 1.48494 * 109.47607 * 82.78669 * 12 10 8 14 14 H 1.48501 * 109.47213 * 322.78088 * 12 10 8 15 15 H 1.48504 * 109.46801 * 202.78396 * 12 10 8 16 16 C 1.52997 * 108.88502 * 269.44761 * 7 6 5 17 17 N 1.46904 * 109.47485 * 298.41426 * 16 7 6 18 18 H 1.08997 * 109.47208 * 295.84658 * 1 2 3 19 19 H 1.09000 * 109.46921 * 55.84778 * 1 2 3 20 20 H 1.08999 * 109.47027 * 175.84175 * 1 2 3 21 21 H 1.09004 * 111.13034 * 277.38020 * 5 4 2 22 22 H 1.08996 * 111.13106 * 153.20080 * 5 4 2 23 23 H 1.09009 * 109.60196 * 198.63010 * 6 5 4 24 24 H 1.08999 * 109.60128 * 78.49652 * 6 5 4 25 25 H 0.97004 * 120.00153 * 179.97438 * 11 10 8 26 26 H 1.08993 * 109.47247 * 58.42266 * 16 7 6 27 27 H 1.09006 * 109.46835 * 178.41873 * 16 7 6 28 28 H 1.00896 * 111.00242 * 184.53143 * 17 16 7 29 29 H 1.00899 * 111.00282 * 308.48960 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 16 2.1656 -0.9123 -1.4550 5 6 3.5180 -1.7786 -0.5571 6 6 2.8475 -2.0204 0.8210 7 6 2.0643 -0.7686 1.2192 8 6 0.9015 -1.1761 2.0869 9 1 0.7648 -0.7194 3.0559 10 6 0.0122 -2.1320 1.6436 11 7 -1.1987 -2.1903 2.1533 12 14 0.5276 -3.3443 0.3191 13 1 1.2767 -4.4663 0.9393 14 1 1.3954 -2.6568 -0.6706 15 1 -0.6800 -3.8733 -0.3645 16 6 2.9817 0.1545 2.0235 17 7 3.4155 -0.5317 3.2479 18 1 -0.3633 0.4480 0.9248 19 1 -0.3633 0.5769 -0.8504 20 1 -0.3633 -1.0250 -0.0745 21 1 4.3967 -1.1409 -0.4601 22 1 3.7707 -2.7214 -1.0421 23 1 3.6132 -2.2262 1.5691 24 1 2.1686 -2.8704 0.7532 25 1 -1.8244 -2.8626 1.8411 26 1 3.8540 0.4129 1.4233 27 1 2.4410 1.0632 2.2885 28 1 3.9624 0.0826 3.8323 29 1 2.6253 -0.9032 3.7535 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266500.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:04 Heat of formation + Delta-G solvation = 29.210470 kcal Electronic energy + Delta-G solvation = -12231.758250 eV Core-core repulsion = 10282.139240 eV Total energy + Delta-G solvation = -1949.619010 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.97818 -32.89534 -32.01957 -30.80420 -26.93811 -25.08647 -22.48431 -21.99181 -18.83348 -16.60069 -15.98127 -15.48027 -14.90712 -14.02888 -13.49174 -13.16932 -12.54731 -12.44442 -12.20971 -12.11623 -11.72845 -11.11550 -10.68137 -10.44198 -10.12649 -10.04150 -9.76756 -9.47933 -8.92711 -8.73656 -8.22280 -7.90237 -6.45206 -6.12553 -4.11536 2.62943 3.11618 3.42503 3.59411 3.72220 4.52653 5.05736 5.41702 5.54455 5.60106 5.79098 5.88592 6.02031 6.11429 6.23588 6.32837 6.38234 6.67742 6.78014 6.86382 7.03895 7.26567 7.48604 7.73859 7.89672 8.19654 8.39040 8.82165 9.48725 10.90083 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.027992 B = 0.024555 C = 0.018849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.049206 B = 1140.010784 C = 1485.126720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.015 4.015 3 H 0.073 0.927 4 S -0.323 6.323 5 C -0.067 4.067 6 C -0.117 4.117 7 C 0.045 3.955 8 C -0.528 4.528 9 H 0.072 0.928 10 C 0.100 3.900 11 N -0.879 5.879 12 Si 0.749 3.251 13 H -0.291 1.291 14 H -0.141 1.141 15 H -0.308 1.308 16 C 0.088 3.912 17 N -0.847 5.847 18 H 0.081 0.919 19 H 0.021 0.979 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.265 0.735 26 H 0.046 0.954 27 H 0.017 0.983 28 H 0.320 0.680 29 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 3.287 -2.794 8.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 H 0.092 0.908 4 S -0.096 6.096 5 C -0.215 4.215 6 C -0.155 4.155 7 C 0.043 3.957 8 C -0.565 4.565 9 H 0.090 0.910 10 C -0.105 4.105 11 N -0.513 5.513 12 Si 0.582 3.418 13 H -0.220 1.220 14 H -0.066 1.066 15 H -0.237 1.237 16 C -0.044 4.044 17 N -0.378 5.378 18 H 0.099 0.901 19 H 0.040 0.960 20 H 0.090 0.910 21 H 0.100 0.900 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.130 0.870 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.227 2.705 -4.446 8.906 hybrid contribution -0.241 -0.192 1.201 1.240 sum 6.986 2.514 -3.244 8.102 Atomic orbital electron populations 1.21832 0.91775 1.02777 1.00022 1.24146 0.99874 0.98718 0.91613 0.90834 1.87212 1.40981 1.58098 1.23332 1.24338 0.97121 1.01338 0.98735 1.22836 0.99182 0.99992 0.93521 1.18968 0.93966 0.90781 0.92035 1.20419 1.07583 1.24430 1.04033 0.91037 1.24864 0.93723 0.96798 0.95085 1.70016 1.04161 1.33605 1.43521 0.89285 0.80613 0.83410 0.88487 1.21992 1.06599 1.23745 1.21702 0.96212 0.94641 0.91802 1.58798 1.29098 1.40284 1.09629 0.90074 0.96045 0.90972 0.90042 0.89258 0.89258 0.92311 0.92574 0.93542 0.96500 0.86951 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 7.77 37.16 0.29 -2.05 15 2 C -0.01 -0.30 3.26 -26.36 -0.09 -0.39 15 3 H 0.07 1.40 7.63 -51.93 -0.40 1.01 15 4 S -0.32 -6.45 19.85 -107.50 -2.13 -8.58 15 5 C -0.07 -1.21 7.04 38.30 0.27 -0.94 15 6 C -0.12 -2.42 4.55 -25.62 -0.12 -2.54 15 7 C 0.05 0.95 0.40 -155.33 -0.06 0.89 15 8 C -0.53 -13.25 5.99 -34.44 -0.21 -13.46 15 9 H 0.07 1.94 7.16 -52.49 -0.38 1.57 15 10 C 0.10 2.71 3.39 -17.82 -0.06 2.65 15 11 N -0.88 -25.43 13.96 55.43 0.77 -24.66 15 12 Si 0.75 18.76 22.10 -169.99 -3.76 15.00 15 13 H -0.29 -7.54 7.10 56.52 0.40 -7.14 15 14 H -0.14 -3.19 2.14 80.96 0.17 -3.01 15 15 H -0.31 -8.26 7.11 56.52 0.40 -7.86 15 16 C 0.09 1.63 5.32 -3.82 -0.02 1.61 15 17 N -0.85 -14.80 8.64 -10.37 -0.09 -14.89 15 18 H 0.08 1.90 7.21 -51.93 -0.37 1.53 15 19 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 20 H 0.07 1.77 3.75 -51.93 -0.19 1.57 15 21 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 22 H 0.09 1.48 8.14 -51.93 -0.42 1.05 15 23 H 0.09 1.80 7.03 -51.92 -0.36 1.44 15 24 H 0.06 1.35 1.53 -51.93 -0.08 1.27 15 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 15 28 H 0.32 4.65 9.08 -39.29 -0.36 4.29 15 29 H 0.36 6.82 7.12 -39.29 -0.28 6.54 15 LS Contribution 218.15 15.07 3.29 3.29 Total: -1.00 -27.73 218.15 -5.81 -33.54 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.90 Total: 10.53 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 0.01 Total: -14.23 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.68 Total: -39.55 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -3.76 Total: 15.00 kcal Atomic # 16 Polarization: -6.45 SS G_CDS: -2.13 Total: -8.58 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -27.73 -5.81 -33.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266500.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.748 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds