Wall clock time and date at job start Mon Mar 30 2020 20:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35743 * 120.32580 * 2 1 4 4 C 1.40851 * 119.75041 * 180.02562 * 3 2 1 5 5 C 1.34546 * 120.58466 * 0.26111 * 4 3 2 6 6 N 1.37488 * 120.75330 * 359.48792 * 5 4 3 7 7 C 1.35175 * 131.14220 * 180.20099 * 6 5 4 8 8 C 1.39550 * 108.53150 * 180.28486 * 7 6 5 9 9 C 1.41506 * 126.50411 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00046 * 180.02562 * 9 8 7 11 11 C 1.39678 * 119.99835 * 0.02562 * 9 8 7 12 12 N 1.31022 * 120.00102 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99871 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47277 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46963 * 119.99973 * 13 11 9 16 16 H 1.48501 * 109.47089 * 240.00287 * 13 11 9 17 17 C 1.41606 * 106.99306 * 359.97438 * 8 7 6 18 18 C 1.37925 * 106.93910 * 0.02562 * 17 8 7 19 19 H 1.09005 * 109.47288 * 269.98005 * 1 2 3 20 20 H 1.09001 * 109.47062 * 29.97472 * 1 2 3 21 21 H 1.08997 * 109.47395 * 149.97291 * 1 2 3 22 22 H 1.08004 * 120.12480 * 0.02562 * 3 2 1 23 23 H 1.07997 * 119.70758 * 179.97438 * 4 3 2 24 24 H 1.08005 * 119.62717 * 179.73663 * 5 4 3 25 25 H 1.07999 * 125.73081 * 0.30072 * 7 6 5 26 26 H 0.97005 * 119.99675 * 180.02562 * 12 11 9 27 27 H 1.07997 * 126.52983 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1924 1.1717 0.0000 4 6 3.6008 1.1575 -0.0005 5 6 4.2737 -0.0075 -0.0063 6 7 3.6022 -1.2073 -0.0013 7 6 4.0562 -2.4805 -0.0018 8 6 2.9588 -3.3426 -0.0017 9 6 2.9995 -4.7571 -0.0026 10 1 2.0802 -5.3238 -0.0028 11 6 4.2288 -5.4203 -0.0032 12 7 5.3441 -4.7328 -0.0024 13 14 4.2826 -7.2876 -0.0036 14 1 2.8974 -7.8227 -0.0039 15 1 4.9961 -7.7619 -1.2165 16 1 4.9970 -7.7625 1.2085 17 6 1.7968 -2.5334 -0.0004 18 6 2.2210 -1.2210 -0.0005 19 1 -0.3634 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5142 22 1 1.6597 2.1113 0.0004 23 1 4.1454 2.0901 -0.0010 24 1 5.3538 -0.0003 -0.0110 25 1 5.0938 -2.7802 -0.0020 26 1 6.1978 -5.1935 -0.0032 27 1 0.7733 -2.8781 0.0004 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270058.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:06 Heat of formation + Delta-G solvation = 39.399486 kcal Electronic energy + Delta-G solvation = -12131.686800 eV Core-core repulsion = 10047.065668 eV Total energy + Delta-G solvation = -2084.621132 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.32925 -37.42755 -35.28227 -34.45992 -31.12738 -28.90804 -27.63371 -26.96485 -22.74356 -22.30550 -21.16656 -18.79809 -17.89413 -16.78021 -16.32094 -15.89046 -15.80600 -14.78768 -14.51367 -13.94513 -13.83454 -13.39641 -13.15360 -12.99902 -12.84748 -12.25687 -12.07328 -11.86748 -11.77439 -11.66961 -11.10087 -10.63449 -9.09397 -8.46875 -7.77077 -6.21878 0.28467 0.92102 1.37614 1.40064 1.56004 2.25479 2.32771 2.48375 2.92716 3.54345 3.96186 4.12222 4.27721 4.42998 4.66018 4.80814 4.88581 5.01843 5.09699 5.24594 5.32564 5.39816 5.50821 5.62682 5.81124 5.99164 6.15405 6.34934 6.76939 6.99372 7.11272 7.19686 8.51505 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.060074 B = 0.009461 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.979599 B = 2958.866324 C = 3409.700576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.166 4.166 5 C 0.012 3.988 6 N -0.345 5.345 7 C -0.171 4.171 8 C 0.028 3.972 9 C -0.470 4.470 10 H 0.070 0.930 11 C 0.017 3.983 12 N -0.855 5.855 13 Si 0.995 3.005 14 H -0.261 1.261 15 H -0.267 1.267 16 H -0.267 1.267 17 C -0.308 4.308 18 C 0.019 3.981 19 H 0.075 0.925 20 H 0.093 0.907 21 H 0.054 0.946 22 H 0.158 0.842 23 H 0.172 0.828 24 H 0.161 0.839 25 H 0.179 0.821 26 H 0.282 0.718 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 7.974 0.001 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.164 4.164 4 C -0.187 4.187 5 C -0.110 4.110 6 N -0.009 5.009 7 C -0.299 4.299 8 C 0.024 3.976 9 C -0.502 4.502 10 H 0.089 0.911 11 C -0.191 4.191 12 N -0.485 5.485 13 Si 0.816 3.184 14 H -0.184 1.184 15 H -0.192 1.192 16 H -0.192 1.192 17 C -0.335 4.335 18 C -0.085 4.085 19 H 0.094 0.906 20 H 0.111 0.889 21 H 0.073 0.927 22 H 0.176 0.824 23 H 0.189 0.811 24 H 0.178 0.822 25 H 0.196 0.804 26 H 0.092 0.908 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.380 8.013 0.003 8.359 hybrid contribution 0.377 -1.080 0.009 1.144 sum -2.003 6.933 0.011 7.216 Atomic orbital electron populations 1.20605 0.88600 1.03172 1.02720 1.19691 0.97520 0.90031 1.02132 1.21027 0.93932 0.97752 1.03644 1.20844 0.94979 0.96897 1.05988 1.22061 0.99059 0.83917 1.05944 1.41661 1.06965 1.06031 1.46209 1.23316 1.00918 0.79173 1.26537 1.17903 0.90913 0.93657 0.95130 1.19283 0.93748 0.90767 1.46408 0.91135 1.26704 0.94203 1.05939 0.92294 1.69562 0.99101 1.38769 1.41091 0.84952 0.79225 0.75550 0.78639 1.18435 1.19189 1.19184 1.21035 0.97649 0.91100 1.23753 1.19028 0.82854 0.95365 1.11224 0.90618 0.88876 0.92655 0.82396 0.81056 0.82181 0.80436 0.90787 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.75 9.91 71.24 0.71 -2.05 15 2 C -0.09 -3.50 5.91 -19.65 -0.12 -3.61 15 3 C -0.14 -4.51 9.71 22.33 0.22 -4.30 15 4 C -0.17 -5.24 9.97 22.06 0.22 -5.02 15 5 C 0.01 0.48 10.89 82.96 0.90 1.38 15 6 N -0.34 -17.29 2.92 -343.52 -1.00 -18.30 15 7 C -0.17 -9.80 10.57 84.50 0.89 -8.91 15 8 C 0.03 1.66 5.93 -21.33 -0.13 1.54 15 9 C -0.47 -27.64 9.41 23.42 0.22 -27.42 15 10 H 0.07 4.00 7.84 -2.91 -0.02 3.97 15 11 C 0.02 0.92 5.49 85.16 0.47 1.38 15 12 N -0.86 -47.33 10.31 21.79 0.22 -47.11 15 13 Si 1.00 41.16 29.56 68.60 2.03 43.19 15 14 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 15 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 16 H -0.27 -10.53 7.11 99.48 0.71 -9.83 15 17 C -0.31 -16.66 10.43 23.03 0.24 -16.42 15 18 C 0.02 0.94 6.60 38.87 0.26 1.19 15 19 H 0.08 2.03 8.14 -2.38 -0.02 2.01 15 20 H 0.09 2.07 8.08 -2.39 -0.02 2.05 15 21 H 0.05 1.73 7.67 -2.39 -0.02 1.71 15 22 H 0.16 3.58 8.06 -2.91 -0.02 3.56 15 23 H 0.17 3.76 8.06 -2.91 -0.02 3.74 15 24 H 0.16 5.43 8.06 -2.91 -0.02 5.41 15 25 H 0.18 10.51 5.69 -2.91 -0.02 10.49 15 26 H 0.28 14.05 8.30 -92.70 -0.77 13.28 15 27 H 0.12 6.17 7.91 -2.91 -0.02 6.15 15 Total: -1.00 -67.85 236.72 6.29 -61.56 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.16 Total: 22.89 kcal Atomic # 6 Polarization: -66.11 SS G_CDS: 3.88 Total: -62.23 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.78 Total: -65.41 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -67.85 6.29 -61.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270058.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.964 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds