Wall clock time and date at job start Mon Mar 30 2020 20:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 119.99714 * 2 1 4 4 H 1.48499 * 109.47346 * 264.39551 * 3 2 1 5 5 H 1.48492 * 109.47262 * 24.39635 * 3 2 1 6 6 H 1.48504 * 109.47102 * 144.39693 * 3 2 1 7 7 C 1.37877 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00072 * 5.09385 * 7 2 1 9 9 C 1.50704 * 119.99812 * 185.09873 * 7 2 1 10 10 N 1.46892 * 109.21114 * 304.91459 * 9 7 2 11 11 C 1.53215 * 109.34047 * 185.31261 * 9 7 2 12 12 C 1.54961 * 116.93431 * 197.53064 * 11 9 7 13 13 C 1.50370 * 116.52705 * 313.81276 * 12 11 9 14 14 S 1.84947 * 109.16676 * 90.85449 * 13 12 11 15 15 C 1.74434 * 101.83322 * 291.97815 * 14 13 12 16 16 C 1.49721 * 109.34135 * 64.52186 * 9 7 2 17 17 H 0.96999 * 120.00514 * 359.97438 * 1 2 3 18 18 H 1.00900 * 110.99986 * 295.01306 * 10 9 7 19 19 H 1.00907 * 111.00004 * 58.96088 * 10 9 7 20 20 H 1.08999 * 107.95366 * 75.64351 * 11 9 7 21 21 H 1.09003 * 107.92590 * 319.39089 * 11 9 7 22 22 H 1.08998 * 108.04553 * 192.03915 * 12 11 9 23 23 H 1.08999 * 108.04470 * 75.59213 * 12 11 9 24 24 H 1.09002 * 109.52368 * 330.94351 * 13 12 11 25 25 H 1.09007 * 109.57199 * 210.78709 * 13 12 11 26 26 H 1.09003 * 108.41614 * 183.48356 * 15 14 13 27 27 H 1.09002 * 108.42320 * 300.72903 * 15 14 13 28 28 H 1.08999 * 110.37514 * 338.53835 * 16 9 7 29 29 H 1.08992 * 110.37550 * 100.93129 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6149 1.9782 -1.3934 5 1 1.3922 2.6839 0.5783 6 1 3.4823 1.4773 0.8151 7 6 2.0045 -1.1940 -0.0005 8 1 1.4678 -2.1274 -0.0840 9 6 3.5071 -1.1965 0.1155 10 7 4.0751 -0.3531 -0.9446 11 6 4.0259 -2.6294 -0.0434 12 6 5.4672 -2.9128 0.4502 13 6 6.5232 -1.9227 0.0434 14 16 6.6548 -0.6088 1.3384 15 6 5.1261 0.2142 1.1695 16 6 3.9022 -0.6475 1.4512 17 1 -0.4851 0.8400 0.0004 18 1 3.8869 -0.7425 -1.8563 19 1 3.7308 0.5930 -0.8775 20 1 3.9753 -2.8897 -1.1007 21 1 3.3495 -3.2928 0.4956 22 1 5.7640 -3.8941 0.0799 23 1 5.4484 -2.9581 1.5391 24 1 6.2497 -1.4691 -0.9093 25 1 7.4818 -2.4319 -0.0575 26 1 5.1145 1.0628 1.8535 27 1 5.0512 0.5964 0.1515 28 1 3.0974 -0.0399 1.8649 29 1 4.1576 -1.4577 2.1340 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327336.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:19 Heat of formation + Delta-G solvation = 30.626790 kcal Electronic energy + Delta-G solvation = -12124.391480 eV Core-core repulsion = 10174.833887 eV Total energy + Delta-G solvation = -1949.557593 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.28552 -33.17258 -32.04494 -30.08080 -28.23527 -25.50835 -22.90413 -21.66511 -18.22290 -16.96024 -16.65669 -15.79602 -14.83966 -13.86207 -13.79068 -13.26926 -12.90363 -12.57994 -12.52716 -11.96890 -11.34301 -11.17843 -11.01095 -10.45332 -10.18405 -10.09020 -9.85518 -9.68940 -9.12107 -9.03178 -8.70328 -7.72190 -6.88203 -6.25983 -4.28293 2.52337 3.06973 3.12366 3.27780 3.40391 4.20426 5.02393 5.30762 5.50329 5.58384 5.61960 5.86016 5.94320 6.18445 6.20996 6.24233 6.42566 6.52329 6.70392 6.82109 6.96000 7.12418 7.21145 7.54908 7.97675 8.21368 8.45734 8.78528 9.34331 10.86559 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.047560 B = 0.016037 C = 0.013502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.594120 B = 1745.523017 C = 2073.266943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.848 3.152 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.224 1.224 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.202 3.798 10 N -0.836 5.836 11 C -0.089 4.089 12 C -0.117 4.117 13 C -0.055 4.055 14 S -0.278 6.278 15 C -0.127 4.127 16 C -0.100 4.100 17 H 0.265 0.735 18 H 0.328 0.672 19 H 0.313 0.687 20 H 0.046 0.954 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.069 0.931 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.155 -1.470 0.009 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.131 4.131 3 Si 0.678 3.322 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.148 1.148 7 C -0.584 4.584 8 H 0.092 0.908 9 C 0.112 3.888 10 N -0.375 5.375 11 C -0.127 4.127 12 C -0.156 4.156 13 C -0.203 4.203 14 S -0.052 6.052 15 C -0.275 4.275 16 C -0.140 4.140 17 H 0.075 0.925 18 H 0.141 0.859 19 H 0.134 0.866 20 H 0.065 0.935 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.117 0.883 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.088 0.912 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.506 -1.277 1.059 11.625 hybrid contribution -1.940 0.917 -1.165 2.442 sum 9.565 -0.360 -0.106 9.573 Atomic orbital electron populations 1.69894 1.06315 1.27169 1.49422 1.25028 0.94779 0.99077 0.94227 0.87768 0.81635 0.83828 0.78945 1.20996 1.22596 1.14815 1.21643 0.90110 0.94847 1.51764 0.90781 1.18173 0.92774 0.89211 0.88652 1.60135 1.64402 1.05414 1.07528 1.21771 0.93218 0.97447 1.00253 1.21612 0.94955 0.97364 1.01670 1.23180 1.00681 0.96480 0.99958 1.85570 1.25964 1.41751 1.51964 1.23253 0.94886 1.00486 1.08920 1.21611 0.95171 0.98579 0.98641 0.92463 0.85855 0.86647 0.93512 0.92165 0.92709 0.91855 0.88346 0.89825 0.91043 0.85325 0.91218 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.68 15 2 C 0.07 1.98 5.24 -17.82 -0.09 1.88 15 3 Si 0.85 19.73 22.95 -169.99 -3.90 15.82 15 4 H -0.28 -6.46 6.95 56.52 0.39 -6.06 15 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 15 6 H -0.22 -4.77 2.96 56.52 0.17 -4.60 15 7 C -0.54 -14.36 8.59 -34.44 -0.30 -14.66 15 8 H 0.07 2.16 7.90 -52.49 -0.41 1.75 15 9 C 0.20 4.35 0.51 -134.27 -0.07 4.28 15 10 N -0.84 -16.82 4.95 -1.44 -0.01 -16.82 15 11 C -0.09 -1.68 4.59 -25.59 -0.12 -1.79 15 12 C -0.12 -1.87 5.05 -27.01 -0.14 -2.01 15 13 C -0.06 -0.87 6.04 35.85 0.22 -0.65 15 14 S -0.28 -4.89 21.72 -107.50 -2.34 -7.22 15 15 C -0.13 -2.46 3.60 36.80 0.13 -2.33 15 16 C -0.10 -2.10 4.41 -28.71 -0.13 -2.23 15 17 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 18 H 0.33 6.34 8.80 -39.29 -0.35 6.00 15 19 H 0.31 6.61 2.44 -39.29 -0.10 6.52 15 20 H 0.05 0.86 7.92 -51.93 -0.41 0.45 15 21 H 0.06 1.18 7.84 -51.93 -0.41 0.78 15 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.06 1.05 6.83 -51.93 -0.35 0.69 15 24 H 0.10 1.60 6.92 -51.93 -0.36 1.24 15 25 H 0.08 1.12 8.14 -51.92 -0.42 0.70 15 26 H 0.07 1.38 7.77 -48.46 -0.38 1.00 15 27 H 0.13 2.59 4.18 -55.66 -0.23 2.35 15 28 H 0.07 1.59 5.46 -51.93 -0.28 1.31 15 29 H 0.06 1.32 6.50 -51.93 -0.34 0.98 15 LS Contribution 215.77 15.07 3.25 3.25 Total: -1.00 -27.89 215.77 -6.55 -34.44 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -3.84 Total: 13.71 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.49 Total: -17.50 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.77 Total: -42.50 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -3.90 Total: 15.82 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -2.34 Total: -7.22 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -27.89 -6.55 -34.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327336.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.068 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds