Wall clock time and date at job start Mon Mar 30 2020 20:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 119.99714 * 2 1 4 4 H 1.48499 * 109.47346 * 264.39551 * 3 2 1 5 5 H 1.48492 * 109.47262 * 24.39635 * 3 2 1 6 6 H 1.48504 * 109.47102 * 144.39693 * 3 2 1 7 7 C 1.37877 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00072 * 5.09385 * 7 2 1 9 9 C 1.50704 * 119.99812 * 185.09873 * 7 2 1 10 10 N 1.46892 * 109.21114 * 304.91459 * 9 7 2 11 11 C 1.53215 * 109.34047 * 185.31261 * 9 7 2 12 12 C 1.54961 * 116.93431 * 197.53064 * 11 9 7 13 13 C 1.50370 * 116.52705 * 313.81276 * 12 11 9 14 14 S 1.84947 * 109.16676 * 90.85449 * 13 12 11 15 15 C 1.74434 * 101.83322 * 291.97815 * 14 13 12 16 16 C 1.49721 * 109.34135 * 64.52186 * 9 7 2 17 17 H 0.96999 * 120.00514 * 359.97438 * 1 2 3 18 18 H 1.00900 * 110.99986 * 295.01306 * 10 9 7 19 19 H 1.00907 * 111.00004 * 58.96088 * 10 9 7 20 20 H 1.08999 * 107.95366 * 75.64351 * 11 9 7 21 21 H 1.09003 * 107.92590 * 319.39089 * 11 9 7 22 22 H 1.08998 * 108.04553 * 192.03915 * 12 11 9 23 23 H 1.08999 * 108.04470 * 75.59213 * 12 11 9 24 24 H 1.09002 * 109.52368 * 330.94351 * 13 12 11 25 25 H 1.09007 * 109.57199 * 210.78709 * 13 12 11 26 26 H 1.09003 * 108.41614 * 183.48356 * 15 14 13 27 27 H 1.09002 * 108.42320 * 300.72903 * 15 14 13 28 28 H 1.08999 * 110.37514 * 338.53835 * 16 9 7 29 29 H 1.08992 * 110.37550 * 100.93129 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6149 1.9782 -1.3934 5 1 1.3922 2.6839 0.5783 6 1 3.4823 1.4773 0.8151 7 6 2.0045 -1.1940 -0.0005 8 1 1.4678 -2.1274 -0.0840 9 6 3.5071 -1.1965 0.1155 10 7 4.0751 -0.3531 -0.9446 11 6 4.0259 -2.6294 -0.0434 12 6 5.4672 -2.9128 0.4502 13 6 6.5232 -1.9227 0.0434 14 16 6.6548 -0.6088 1.3384 15 6 5.1261 0.2142 1.1695 16 6 3.9022 -0.6475 1.4512 17 1 -0.4851 0.8400 0.0004 18 1 3.8869 -0.7425 -1.8563 19 1 3.7308 0.5930 -0.8775 20 1 3.9753 -2.8897 -1.1007 21 1 3.3495 -3.2928 0.4956 22 1 5.7640 -3.8941 0.0799 23 1 5.4484 -2.9581 1.5391 24 1 6.2497 -1.4691 -0.9093 25 1 7.4818 -2.4319 -0.0575 26 1 5.1145 1.0628 1.8535 27 1 5.0512 0.5964 0.1515 28 1 3.0974 -0.0399 1.8649 29 1 4.1576 -1.4577 2.1340 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261327336.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:19 Heat of formation + Delta-G solvation = 11.311583 kcal Electronic energy + Delta-G solvation = -12125.229051 eV Core-core repulsion = 10174.833887 eV Total energy + Delta-G solvation = -1950.395164 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.96962 -34.81330 -33.87701 -31.74124 -29.85324 -27.29514 -24.64049 -23.12158 -19.90372 -18.83690 -18.33402 -17.34412 -16.68366 -15.44399 -15.29785 -14.82900 -14.50233 -14.38424 -14.09761 -13.47250 -12.98603 -12.88392 -12.69353 -12.30654 -11.86547 -11.74459 -11.33477 -11.23376 -10.97416 -10.80136 -10.38359 -9.42695 -8.39913 -8.30087 -6.45918 1.12888 1.20386 1.36399 1.41397 1.89641 2.22315 2.94460 3.82228 4.01627 4.07747 4.29812 4.33796 4.36796 4.58555 4.86319 4.89923 4.96641 5.04811 5.24935 5.30777 5.35289 5.47755 5.55365 5.67284 6.03156 6.40222 6.59004 6.70681 7.21170 8.76142 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.047560 B = 0.016037 C = 0.013502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.594120 B = 1745.523017 C = 2073.266943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.015 3.985 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.313 1.313 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.029 0.971 9 C 0.205 3.795 10 N -0.819 5.819 11 C -0.088 4.088 12 C -0.109 4.109 13 C -0.052 4.052 14 S -0.273 6.273 15 C -0.128 4.128 16 C -0.099 4.099 17 H 0.264 0.736 18 H 0.334 0.666 19 H 0.309 0.691 20 H 0.050 0.950 21 H 0.043 0.957 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.127 0.873 28 H 0.047 0.953 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.056 -1.330 -0.236 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.242 1.242 6 H -0.116 1.116 7 C -0.584 4.584 8 H 0.048 0.952 9 C 0.114 3.886 10 N -0.358 5.358 11 C -0.126 4.126 12 C -0.148 4.148 13 C -0.199 4.199 14 S -0.047 6.047 15 C -0.277 4.277 16 C -0.139 4.139 17 H 0.073 0.927 18 H 0.148 0.852 19 H 0.129 0.871 20 H 0.069 0.931 21 H 0.062 0.938 22 H 0.103 0.897 23 H 0.078 0.922 24 H 0.114 0.886 25 H 0.134 0.866 26 H 0.093 0.907 27 H 0.144 0.856 28 H 0.066 0.934 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.441 -1.159 0.805 14.510 hybrid contribution -2.884 0.733 -1.100 3.173 sum 11.557 -0.426 -0.295 11.568 Atomic orbital electron populations 1.70067 1.08443 1.28012 1.51902 1.25878 0.95390 1.03093 0.93961 0.86784 0.81111 0.78432 0.79905 1.19626 1.24166 1.11607 1.22008 0.92990 0.92984 1.50398 0.95237 1.18096 0.89553 0.91377 0.89548 1.60133 1.63322 1.04822 1.07490 1.21718 0.95269 0.95094 1.00528 1.21520 0.92801 0.99116 1.01384 1.23292 1.02052 0.95700 0.98856 1.85589 1.23828 1.42364 1.52923 1.23093 0.95279 1.00580 1.08716 1.21506 0.95561 0.98836 0.98042 0.92696 0.85200 0.87114 0.93121 0.93790 0.89662 0.92234 0.88572 0.86620 0.90730 0.85609 0.93401 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.14 13.96 21.45 0.30 -57.84 15 2 C 0.01 0.83 5.24 84.66 0.44 1.28 15 3 Si 0.91 40.89 22.95 68.60 1.57 42.46 15 4 H -0.27 -11.49 6.95 99.48 0.69 -10.80 15 5 H -0.31 -14.80 7.11 99.48 0.71 -14.09 15 6 H -0.19 -7.68 2.96 99.48 0.29 -7.38 15 7 C -0.54 -29.33 8.59 25.60 0.22 -29.11 15 8 H 0.03 1.80 7.90 -2.91 -0.02 1.78 15 9 C 0.21 8.60 0.51 1.80 0.00 8.61 15 10 N -0.82 -31.03 4.95 -158.46 -0.79 -31.81 15 11 C -0.09 -3.18 4.59 31.34 0.14 -3.03 15 12 C -0.11 -3.10 5.05 30.41 0.15 -2.94 15 13 C -0.05 -1.38 6.04 71.13 0.43 -0.95 15 14 S -0.27 -8.57 21.72 -56.49 -1.23 -9.80 15 15 C -0.13 -4.59 3.60 71.75 0.26 -4.33 15 16 C -0.10 -4.02 4.41 29.31 0.13 -3.89 15 17 H 0.26 15.41 8.31 -92.71 -0.77 14.64 15 18 H 0.33 12.15 8.80 -89.69 -0.79 11.36 15 19 H 0.31 12.24 2.44 -89.69 -0.22 12.02 15 20 H 0.05 1.77 7.92 -2.39 -0.02 1.75 15 21 H 0.04 1.71 7.84 -2.39 -0.02 1.69 15 22 H 0.08 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.06 1.77 6.83 -2.39 -0.02 1.75 15 24 H 0.10 2.69 6.92 -2.39 -0.02 2.67 15 25 H 0.12 2.45 8.14 -2.38 -0.02 2.43 15 26 H 0.07 2.63 7.77 -4.59 -0.04 2.60 15 27 H 0.13 4.62 4.18 -18.80 -0.08 4.54 15 28 H 0.05 2.14 5.46 -2.39 -0.01 2.12 15 29 H 0.07 2.71 6.50 -2.39 -0.02 2.70 15 Total: -1.00 -60.93 215.77 1.28 -59.65 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.36 Total: 31.72 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 1.78 Total: -34.38 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -0.49 Total: -89.65 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.57 Total: 42.46 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.23 Total: -9.80 kcal Total: -60.93 1.28 -59.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327336.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.963 kcal (2) G-P(sol) polarization free energy of solvation -60.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds