Wall clock time and date at job start Mon Mar 30 2020 20:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1 5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1 6 6 H 1.48508 * 109.46705 * 154.98442 * 3 2 1 7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1 9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1 10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2 11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2 12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47027 * 180.02562 * 12 11 9 14 14 F 1.39898 * 112.85384 * 50.32814 * 13 12 11 15 15 C 1.53789 * 113.60977 * 279.13109 * 13 12 11 16 16 C 1.53954 * 87.01973 * 220.05182 * 15 13 12 17 17 C 1.53779 * 87.11440 * 25.36099 * 16 15 13 18 18 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 19 19 H 0.96999 * 119.99758 * 359.97438 * 11 9 7 20 20 H 1.09002 * 109.46895 * 299.99322 * 12 11 9 21 21 H 1.09000 * 109.47316 * 59.99279 * 12 11 9 22 22 H 1.09000 * 113.61138 * 334.56885 * 15 13 12 23 23 H 1.08994 * 113.61423 * 105.47434 * 15 13 12 24 24 H 1.09009 * 113.53637 * 270.81349 * 16 15 13 25 25 H 1.08995 * 113.67102 * 139.93536 * 16 15 13 26 26 H 1.08996 * 113.62307 * 220.09077 * 17 16 15 27 27 H 1.09008 * 113.61286 * 89.18534 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8990 -0.3972 13 6 2.2350 -6.0506 -0.5188 14 9 3.2111 -6.0305 0.4832 15 6 2.8094 -6.2205 -1.9352 16 6 2.6879 -7.7394 -1.7153 17 6 1.5717 -7.4254 -0.7052 18 1 -0.4850 0.8400 0.0004 19 1 2.9311 -3.6293 -0.2590 20 1 0.6073 -5.0546 0.4804 21 1 0.6098 -4.8644 -1.2894 22 1 2.1560 -5.8393 -2.7199 23 1 3.8379 -5.8736 -2.0337 24 1 3.5733 -8.1859 -1.2627 25 1 2.3412 -8.2825 -2.5944 26 1 1.6024 -8.0497 0.1877 27 1 0.5792 -7.3742 -1.1532 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306173267.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:27 Heat of formation + Delta-G solvation = -77.102990 kcal Electronic energy + Delta-G solvation = -12862.883884 eV Core-core repulsion = 10342.441600 eV Total energy + Delta-G solvation = -2520.442283 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.43396 -38.12866 -36.90369 -33.09362 -32.17539 -28.05299 -25.92228 -25.64113 -22.45760 -19.67790 -19.44087 -17.40771 -15.85851 -15.64106 -15.26737 -14.86070 -14.29656 -13.83110 -13.52756 -13.41164 -12.63032 -12.42008 -12.12422 -11.54186 -11.27704 -11.12858 -11.01253 -10.88483 -10.46915 -10.25588 -10.09463 -9.88998 -8.83436 -7.61708 -7.51318 -6.18295 -4.61959 3.15471 3.22511 3.26567 4.09973 4.29811 4.34682 4.58393 4.67377 4.73159 4.89209 5.12875 5.61508 5.66523 5.68787 5.75666 5.81920 5.91139 6.00608 6.25536 6.38848 6.60527 7.45704 7.93958 8.07992 8.34732 9.04184 9.53660 10.60755 10.78944 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.070101 B = 0.007747 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.329941 B = 3613.274922 C = 3781.619706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.583 6.583 11 N -0.764 5.764 12 C 0.126 3.874 13 C 0.083 3.917 14 F -0.190 7.190 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.153 4.153 18 H 0.268 0.732 19 H 0.383 0.617 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -10.760 -3.219 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.420 5.420 12 C 0.001 3.999 13 C 0.064 3.936 14 F -0.171 7.171 15 C -0.190 4.190 16 C -0.179 4.179 17 C -0.191 4.191 18 H 0.079 0.921 19 H 0.214 0.786 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.118 0.882 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.401 -10.657 -3.182 11.961 hybrid contribution 1.001 0.768 0.112 1.266 sum 5.402 -9.890 -3.070 11.679 Atomic orbital electron populations 1.70031 1.07098 1.27248 1.35352 1.25707 0.94597 1.00303 0.92581 0.86349 0.80266 0.81430 0.78650 1.19807 1.20455 1.18857 1.20886 0.94165 0.89531 1.53640 0.91336 1.18240 0.87126 0.82352 0.76383 1.90592 1.14082 1.86447 1.55448 1.46038 1.08778 1.05307 1.81912 1.21283 0.93253 0.83626 1.01787 1.22185 0.87927 0.96928 0.86552 1.92818 1.64227 1.97418 1.62616 1.23570 1.02830 0.96332 0.96268 1.22890 0.98957 0.96528 0.99478 1.23502 0.99585 0.95451 1.00536 0.92129 0.78554 0.92477 0.91533 0.88214 0.90299 0.89944 0.90805 0.90324 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.37 11.85 55.55 0.66 -22.71 15 2 C 0.09 2.49 5.49 -17.37 -0.10 2.39 15 3 Si 0.91 20.42 29.56 -169.99 -5.03 15.39 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.55 -15.78 9.53 -35.63 -0.34 -16.12 15 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 15 9 C 0.55 16.24 7.74 -12.98 -0.10 16.14 15 10 O -0.58 -19.23 15.05 5.20 0.08 -19.15 15 11 N -0.76 -17.89 5.47 -61.72 -0.34 -18.23 15 12 C 0.13 2.49 5.35 -4.04 -0.02 2.47 15 13 C 0.08 1.28 1.64 -89.80 -0.15 1.13 15 14 F -0.19 -3.29 16.86 2.25 0.04 -3.25 15 15 C -0.15 -1.96 7.54 -25.82 -0.19 -2.16 15 16 C -0.14 -1.51 8.07 -25.83 -0.21 -1.72 15 17 C -0.15 -1.83 7.54 -25.92 -0.20 -2.03 15 18 H 0.27 7.36 8.29 -40.82 -0.34 7.02 15 19 H 0.38 8.17 8.21 -40.82 -0.34 7.84 15 20 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 21 H 0.07 1.31 7.98 -51.93 -0.41 0.90 15 22 H 0.10 1.25 7.99 -51.93 -0.41 0.84 15 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.08 0.85 8.14 -51.92 -0.42 0.43 15 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 27 H 0.10 1.09 8.10 -51.92 -0.42 0.67 15 LS Contribution 242.15 15.07 3.65 3.65 Total: -1.00 -34.19 242.15 -5.49 -39.67 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.24 Total: 4.52 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.30 Total: 0.10 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.32 Total: -40.94 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.08 Total: -19.15 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -34.19 -5.49 -39.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306173267.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.429 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds