Wall clock time and date at job start Mon Mar 30 2020 20:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46972 * 2 1 4 4 C 1.47194 * 109.47180 * 240.00044 * 2 1 3 5 5 N 2.60794 * 109.47088 * 239.99913 * 2 1 3 6 6 C 1.50702 * 109.46731 * 119.99893 * 2 1 3 7 7 C 1.37633 * 120.12866 * 54.46351 * 6 2 1 8 8 C 1.38613 * 120.24845 * 179.69926 * 7 6 2 9 9 C 1.38663 * 120.49954 * 0.59677 * 8 7 6 10 10 C 1.37594 * 120.24614 * 359.67889 * 9 8 7 11 11 C 1.40697 * 120.12585 * 234.72994 * 6 2 1 12 12 C 1.41399 * 120.24663 * 0.02982 * 11 6 2 13 13 H 1.08005 * 119.99584 * 329.35201 * 12 11 6 14 14 C 1.39939 * 120.00596 * 149.35167 * 12 11 6 15 15 N 1.30833 * 119.99775 * 348.44930 * 14 12 11 16 16 Si 1.86798 * 120.00379 * 168.44237 * 14 12 11 17 17 H 1.48497 * 109.47046 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47015 * 120.00332 * 16 14 12 19 19 H 1.48498 * 109.47356 * 240.00464 * 16 14 12 20 20 H 1.08997 * 109.46544 * 59.99801 * 1 2 3 21 21 H 1.09000 * 109.46972 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46990 * 299.99949 * 1 2 3 23 23 H 1.08000 * 119.87927 * 359.97438 * 7 6 2 24 24 H 1.07998 * 119.75071 * 180.29738 * 8 7 6 25 25 H 1.07997 * 119.87609 * 179.70713 * 9 8 7 26 26 H 1.08002 * 120.12686 * 180.02562 * 10 9 8 27 27 H 0.97001 * 119.99826 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0208 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1294 6 6 2.0323 -0.7104 1.2305 7 6 1.6102 -1.9903 1.5100 8 6 2.0754 -2.6483 2.6378 9 6 2.9600 -2.0225 3.5030 10 6 3.3910 -0.7413 3.2464 11 6 2.9302 -0.0658 2.1011 12 6 3.3659 1.2513 1.8275 13 1 3.4495 1.5912 0.8057 14 6 3.6889 2.1145 2.8806 15 7 3.3778 1.7918 4.1097 16 14 4.5641 3.7274 2.5314 17 1 4.8012 3.8558 1.0711 18 1 3.7221 4.8585 2.9971 19 1 5.8644 3.7503 3.2483 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.9174 -2.4854 0.8457 24 1 1.7426 -3.6543 2.8468 25 1 3.3124 -2.5429 4.3813 26 1 4.0804 -0.2559 3.9214 27 1 3.6020 2.3899 4.8397 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306489848.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:48 Heat of formation + Delta-G solvation = 16.439837 kcal Electronic energy + Delta-G solvation = -12112.501881 eV Core-core repulsion = 10026.885144 eV Total energy + Delta-G solvation = -2085.616737 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93335 -37.58427 -35.45975 -34.61692 -31.49995 -29.99449 -27.07230 -25.37899 -22.80396 -21.87875 -19.13162 -18.05115 -17.39823 -16.36044 -15.79051 -15.34350 -14.58507 -14.50696 -14.31833 -14.17695 -13.58375 -13.32556 -13.08619 -12.76501 -12.66067 -12.46990 -12.37834 -12.22221 -11.91066 -11.22586 -11.04975 -10.99020 -9.23628 -9.20072 -8.53891 -6.30390 0.95801 1.10945 1.46048 1.55873 1.58314 1.87467 1.90635 2.26515 2.82694 3.21437 3.77781 4.23516 4.39753 4.51744 4.61422 4.69186 4.88963 5.07212 5.14088 5.31680 5.34618 5.42439 5.53185 5.75310 6.02804 6.14725 6.21338 6.40936 6.65497 6.74683 7.00072 7.07881 8.43412 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.013594 C = 0.010347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.310601 B = 2059.213246 C = 2705.577523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.059 3.941 3 H 0.124 0.876 4 C 0.248 3.752 5 N -0.501 5.501 6 C -0.198 4.198 7 C -0.085 4.085 8 C -0.237 4.237 9 C -0.112 4.112 10 C -0.181 4.181 11 C 0.097 3.903 12 C -0.491 4.491 13 H 0.085 0.915 14 C 0.039 3.961 15 N -0.831 5.831 16 Si 0.972 3.028 17 H -0.257 1.257 18 H -0.267 1.267 19 H -0.273 1.273 20 H 0.078 0.922 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 1.243 -1.463 4.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.038 3.962 3 H 0.142 0.858 4 C -0.068 4.068 5 N -0.178 5.178 6 C -0.201 4.201 7 C -0.103 4.103 8 C -0.256 4.256 9 C -0.130 4.130 10 C -0.201 4.201 11 C 0.094 3.906 12 C -0.521 4.521 13 H 0.103 0.897 14 C -0.175 4.175 15 N -0.457 5.457 16 Si 0.794 3.206 17 H -0.181 1.181 18 H -0.191 1.191 19 H -0.198 1.198 20 H 0.097 0.903 21 H 0.081 0.919 22 H 0.095 0.905 23 H 0.132 0.868 24 H 0.133 0.867 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.008 0.528 -2.636 4.034 hybrid contribution 0.496 0.741 0.712 1.141 sum -2.513 1.268 -1.923 3.409 Atomic orbital electron populations 1.21756 0.90067 1.03098 1.03606 1.17726 0.97619 0.98509 0.82343 0.85845 1.29876 0.91433 0.92127 0.93392 1.81066 1.11130 1.11682 1.13960 1.19528 1.04290 0.96827 0.99435 1.20695 0.98775 0.94105 0.96765 1.20765 1.05699 1.00627 0.98477 1.21001 0.98189 0.95136 0.98660 1.21307 1.03700 0.94321 1.00770 1.17759 0.88662 0.92948 0.91191 1.19785 1.41185 0.96646 0.94498 0.89662 1.26596 0.93634 1.03135 0.94145 1.69863 1.36546 1.38230 1.01077 0.85287 0.78293 0.77228 0.79761 1.18066 1.19139 1.19845 0.90311 0.91897 0.90480 0.86850 0.86668 0.87479 0.88392 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.90 71.99 0.64 -2.87 15 2 C 0.06 2.10 2.78 -13.34 -0.04 2.06 15 3 H 0.12 4.41 5.85 -2.39 -0.01 4.40 15 4 C 0.25 9.28 14.38 89.44 1.29 10.56 15 5 N -0.50 -20.30 18.54 20.00 0.37 -19.93 15 6 C -0.20 -8.47 4.82 -19.41 -0.09 -8.57 15 7 C -0.09 -3.44 8.89 22.22 0.20 -3.24 15 8 C -0.24 -9.71 10.05 22.46 0.23 -9.48 15 9 C -0.11 -4.95 10.02 22.22 0.22 -4.73 15 10 C -0.18 -9.08 8.65 22.73 0.20 -8.88 15 11 C 0.10 4.76 5.52 -21.29 -0.12 4.64 15 12 C -0.49 -23.87 8.12 23.46 0.19 -23.68 15 13 H 0.09 3.92 6.55 -2.91 -0.02 3.90 15 14 C 0.04 1.84 5.23 85.25 0.45 2.29 15 15 N -0.83 -41.16 11.02 21.83 0.24 -40.92 15 16 Si 0.97 36.17 29.57 68.60 2.03 38.20 15 17 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 18 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 20 H 0.08 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.06 1.65 7.10 -2.39 -0.02 1.63 15 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.11 3.97 7.25 -2.91 -0.02 3.95 15 24 H 0.12 4.05 8.06 -2.91 -0.02 4.03 15 25 H 0.11 4.22 8.06 -2.91 -0.02 4.20 15 26 H 0.10 5.18 6.40 -2.91 -0.02 5.17 15 27 H 0.29 12.90 8.30 -92.71 -0.77 12.13 15 Total: -1.00 -55.07 241.65 6.97 -48.10 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.18 Total: 16.45 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 3.16 Total: -41.90 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.61 Total: -60.85 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -55.07 6.97 -48.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489848.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.540 kcal (2) G-P(sol) polarization free energy of solvation -55.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds