Wall clock time and date at job start Mon Mar 30 2020 20:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00283 * 2 1 4 4 H 1.48506 * 109.46671 * 269.99746 * 3 2 1 5 5 H 1.48500 * 109.47121 * 29.99632 * 3 2 1 6 6 H 1.48502 * 109.47158 * 149.99788 * 3 2 1 7 7 C 1.37883 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00356 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99814 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.23815 * 301.99899 * 9 7 2 11 11 C 1.53482 * 110.27134 * 180.02562 * 9 7 2 12 12 C 1.51087 * 106.34876 * 240.94042 * 11 9 7 13 13 N 1.32117 * 130.27032 * 180.02562 * 12 11 9 14 14 C 1.31790 * 122.14618 * 179.73204 * 13 12 11 15 15 C 1.38396 * 121.08632 * 0.52716 * 14 13 12 16 16 C 1.38176 * 119.22371 * 359.45151 * 15 14 13 17 17 C 1.39405 * 109.43733 * 0.02562 * 12 11 9 18 18 C 1.47077 * 110.84593 * 359.97438 * 17 12 11 19 19 O 1.21254 * 125.97912 * 179.97438 * 18 17 12 20 20 H 0.96998 * 120.00109 * 0.02562 * 1 2 3 21 21 H 1.09004 * 110.07682 * 121.72196 * 11 9 7 22 22 H 1.08993 * 110.08069 * 0.16564 * 11 9 7 23 23 H 1.07994 * 119.46126 * 180.27609 * 14 13 12 24 24 H 1.08002 * 120.39143 * 179.73568 * 15 14 13 25 25 H 1.07995 * 120.79081 * 180.25773 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.5926 -2.5546 0.8676 11 6 2.2318 -3.6797 0.0018 12 6 1.9629 -4.4574 -1.2653 13 7 2.5347 -5.5530 -1.7324 14 6 2.1654 -6.1063 -2.8701 15 6 1.1579 -5.5521 -3.6403 16 6 0.5244 -4.4061 -3.1993 17 6 0.9366 -3.8407 -1.9792 18 6 0.4531 -2.6446 -1.2729 19 8 -0.4309 -1.9044 -1.6482 20 1 -0.4850 0.8400 -0.0004 21 1 2.0562 -4.3111 0.8728 22 1 3.2582 -3.3132 0.0054 23 1 2.6597 -7.0047 -3.2090 24 1 0.8671 -6.0125 -4.5730 25 1 -0.2678 -3.9546 -3.7781 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096190852.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:20 Heat of formation + Delta-G solvation = -0.093583 kcal Electronic energy + Delta-G solvation = -12478.115532 eV Core-core repulsion = 10228.637278 eV Total energy + Delta-G solvation = -2249.478253 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.069 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.16807 -37.44338 -34.52289 -32.40061 -31.98902 -29.00719 -25.70034 -24.78927 -22.26255 -21.16722 -18.98817 -16.73336 -16.01144 -15.85173 -15.20545 -14.47855 -14.27500 -13.40202 -12.86999 -12.73884 -12.44318 -12.25464 -12.07124 -11.48310 -10.99188 -10.80964 -10.64086 -9.81158 -9.49540 -9.40016 -9.16657 -8.59559 -8.42368 -8.09380 -6.06251 -4.16380 1.16499 1.59083 3.28422 3.35068 3.37142 3.55361 4.31486 4.36194 4.48288 5.02073 5.14681 5.29112 5.34535 5.43945 5.77955 5.93486 6.17461 6.22632 6.36247 6.53591 6.63397 7.03100 7.07554 7.37851 7.79363 8.10267 8.31093 8.78457 9.02235 9.46269 10.97934 Molecular weight = 203.07amu Principal moments of inertia in cm(-1) A = 0.053560 B = 0.010492 C = 0.009688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.655817 B = 2668.116147 C = 2889.577144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.068 0.932 9 C 0.010 3.990 10 H 0.067 0.933 11 C -0.066 4.066 12 C 0.165 3.835 13 N -0.496 5.496 14 C 0.116 3.884 15 C -0.201 4.201 16 C -0.029 4.029 17 C -0.224 4.224 18 C 0.401 3.599 19 O -0.413 6.413 20 H 0.264 0.736 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.154 0.846 24 H 0.132 0.868 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -8.605 -4.074 9.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.569 4.569 8 H 0.086 0.914 9 C -0.009 4.009 10 H 0.085 0.915 11 C -0.104 4.104 12 C 0.028 3.972 13 N -0.205 5.205 14 C -0.042 4.042 15 C -0.221 4.221 16 C -0.055 4.055 17 C -0.227 4.227 18 C 0.274 3.726 19 O -0.284 6.284 20 H 0.074 0.926 21 H 0.097 0.903 22 H 0.111 0.889 23 H 0.171 0.829 24 H 0.150 0.850 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.369 -8.457 -3.780 9.561 hybrid contribution -0.187 1.101 -0.834 1.394 sum 2.182 -7.356 -4.614 8.953 Atomic orbital electron populations 1.70082 1.05698 1.26940 1.45051 1.25120 0.94972 0.99557 0.94555 0.86529 0.79880 0.83079 0.78224 1.20616 1.20995 1.19581 1.20820 0.92738 0.88474 1.54851 0.91423 1.19454 0.93602 0.93588 0.94237 0.91545 1.21099 1.02686 0.95257 0.91325 1.22351 0.89483 0.88954 0.96415 1.66940 1.28656 1.10775 1.14136 1.22718 0.93663 0.98117 0.89731 1.21946 0.99878 0.98248 1.02028 1.21637 0.96793 0.93312 0.93712 1.22943 1.00953 1.01991 0.96857 1.23222 0.80906 0.79885 0.88629 1.90440 1.25390 1.42805 1.69763 0.92622 0.90272 0.88946 0.82922 0.84964 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.69 11.11 55.43 0.62 -24.07 15 2 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.53 -14.26 8.53 -34.44 -0.29 -14.55 15 8 H 0.07 1.75 7.34 -52.49 -0.39 1.36 15 9 C 0.01 0.25 2.88 -92.54 -0.27 -0.01 15 10 H 0.07 1.70 8.14 -51.93 -0.42 1.28 15 11 C -0.07 -1.33 6.45 -27.44 -0.18 -1.51 15 12 C 0.16 3.30 7.39 -81.85 -0.61 2.70 15 13 N -0.50 -9.02 10.34 -8.99 -0.09 -9.12 15 14 C 0.12 1.71 11.17 -17.51 -0.20 1.52 15 15 C -0.20 -2.87 10.10 -39.55 -0.40 -3.27 15 16 C -0.03 -0.50 10.24 -38.70 -0.40 -0.90 15 17 C -0.22 -4.74 6.13 -104.97 -0.64 -5.39 15 18 C 0.40 10.05 6.93 -30.59 -0.21 9.84 15 19 O -0.41 -11.66 15.81 5.58 0.09 -11.57 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 22 H 0.09 1.83 7.38 -51.93 -0.38 1.45 15 23 H 0.15 1.64 8.06 -52.49 -0.42 1.21 15 24 H 0.13 1.39 8.06 -52.49 -0.42 0.96 15 25 H 0.13 2.13 8.06 -52.49 -0.42 1.70 15 LS Contribution 226.72 15.07 3.42 3.42 Total: -1.00 -31.08 226.72 -6.29 -37.38 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -2.02 Total: -2.29 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.28 Total: -9.86 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.52 Total: -33.19 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.08 -6.29 -37.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096190852.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.283 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds