Wall clock time and date at job start Mon Mar 30 2020 20:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.74697 * 2 1 4 4 C 1.54348 * 110.83856 * 236.33001 * 2 1 3 5 5 C 1.51422 * 105.16330 * 215.54838 * 4 2 1 6 6 C 1.38970 * 130.22296 * 196.87259 * 5 4 2 7 7 C 1.38478 * 120.75370 * 179.85807 * 6 5 4 8 8 C 1.37641 * 120.21036 * 0.45100 * 7 6 5 9 9 C 1.40597 * 119.64300 * 359.77148 * 8 7 6 10 10 C 1.41390 * 120.14151 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99825 * 155.05012 * 10 9 8 12 12 C 1.39948 * 120.00366 * 335.05408 * 10 9 8 13 13 N 1.30822 * 119.99799 * 342.29861 * 12 10 9 14 14 Si 1.86801 * 120.00258 * 162.29667 * 12 10 9 15 15 H 1.48501 * 109.46924 * 94.65671 * 14 12 10 16 16 H 1.48499 * 109.46921 * 214.65833 * 14 12 10 17 17 H 1.48507 * 109.47091 * 334.65760 * 14 12 10 18 18 C 1.37596 * 109.79322 * 17.15636 * 5 4 2 19 19 C 1.51343 * 109.91336 * 0.02562 * 18 5 4 20 20 H 1.09004 * 109.47017 * 296.55229 * 1 2 3 21 21 H 1.09007 * 109.46769 * 56.54025 * 1 2 3 22 22 H 1.08996 * 109.47681 * 176.54472 * 1 2 3 23 23 H 1.08996 * 110.30672 * 96.62360 * 4 2 1 24 24 H 1.09007 * 110.30527 * 334.46508 * 4 2 1 25 25 H 1.07997 * 119.61994 * 0.29582 * 6 5 4 26 26 H 1.07997 * 119.89385 * 180.24640 * 7 6 5 27 27 H 1.08001 * 120.17488 * 179.74534 * 8 7 6 28 28 H 0.96998 * 120.00226 * 179.97438 * 13 12 10 29 29 H 1.08992 * 110.31465 * 101.75914 * 19 18 5 30 30 H 1.08998 * 110.30518 * 223.83851 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9161 1.0193 0.0000 4 6 2.0791 -0.7997 -1.2005 5 6 3.3313 -1.4776 -0.6855 6 6 4.3874 -2.0574 -1.3780 7 6 5.4510 -2.6281 -0.6992 8 6 5.4702 -2.6359 0.6771 9 6 4.4060 -2.0569 1.3906 10 6 4.4146 -2.0596 2.8045 11 1 3.8610 -1.3091 3.3493 12 6 5.1406 -3.0345 3.4981 13 7 5.5188 -4.1272 2.8861 14 14 5.5695 -2.7757 5.2977 15 1 4.5441 -3.4295 6.1499 16 1 6.9004 -3.3709 5.5798 17 1 5.6050 -1.3209 5.5938 18 6 3.3304 -1.4746 0.6905 19 6 2.0788 -0.7959 1.2037 20 1 -0.3633 0.4594 0.9193 21 1 -0.3633 0.5667 -0.8574 22 1 -0.3634 -1.0257 -0.0619 23 1 2.3238 -0.1274 -2.0228 24 1 1.3515 -1.5444 -1.5235 25 1 4.3820 -2.0567 -2.4580 26 1 6.2665 -3.0713 -1.2514 27 1 6.2980 -3.0847 1.2059 28 1 6.0222 -4.8028 3.3667 29 1 1.3516 -1.5395 1.5296 30 1 2.3235 -0.1217 2.0244 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259791102.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:27:35 Heat of formation + Delta-G solvation = -3.669047 kcal Electronic energy + Delta-G solvation = -12580.444517 eV Core-core repulsion = 10532.070226 eV Total energy + Delta-G solvation = -2048.374291 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 202.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.70549 -35.35193 -33.40491 -30.17039 -29.69017 -26.65562 -25.30457 -24.52795 -20.39852 -19.58788 -19.26542 -16.77692 -15.35928 -14.96734 -14.34152 -13.71999 -13.39625 -12.75081 -12.49324 -12.11425 -12.00112 -11.82312 -11.47125 -11.07822 -10.95258 -10.59850 -10.49796 -10.36544 -10.02076 -9.92805 -9.51423 -9.25010 -9.07735 -7.29217 -7.08420 -6.69521 -4.28525 2.82285 3.02108 3.09290 3.13857 3.26066 3.96844 4.66408 5.25065 5.44089 5.49407 5.66230 5.93954 6.06654 6.09610 6.23125 6.33138 6.49164 6.54769 6.59816 6.67022 6.72473 6.90413 6.99843 7.14128 7.33785 7.51544 7.67510 8.00502 8.08652 8.15482 8.36811 8.68603 8.95322 9.03622 10.24392 Molecular weight = 202.11amu Principal moments of inertia in cm(-1) A = 0.036475 B = 0.011317 C = 0.008954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.470052 B = 2473.506056 C = 3126.361699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.068 4.068 5 C -0.082 4.082 6 C -0.227 4.227 7 C -0.106 4.106 8 C -0.165 4.165 9 C 0.123 3.877 10 C -0.461 4.461 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.796 5.796 14 Si 0.904 3.096 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.199 4.199 19 C -0.050 4.050 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.279 0.721 29 H 0.057 0.943 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 4.024 -1.851 6.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.088 0.912 4 C -0.106 4.106 5 C -0.082 4.082 6 C -0.246 4.246 7 C -0.125 4.125 8 C -0.185 4.185 9 C 0.121 3.879 10 C -0.491 4.491 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.422 5.422 14 Si 0.728 3.272 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.185 1.185 18 C -0.200 4.200 19 C -0.087 4.087 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.013 3.795 -1.799 5.809 hybrid contribution 0.320 -0.137 0.785 0.859 sum -3.693 3.658 -1.014 5.296 Atomic orbital electron populations 1.21772 0.95496 1.01470 1.00843 1.21870 0.94518 0.98913 0.96285 0.91181 1.20982 0.95196 0.97522 0.96853 1.20034 0.94494 0.99052 0.94634 1.19841 0.97472 1.10533 0.96748 1.20568 0.97037 0.99946 0.94922 1.21217 0.99671 1.05336 0.92249 1.17176 0.88733 0.88922 0.93092 1.19531 1.26580 1.11492 0.91516 0.90555 1.25889 0.93686 0.93927 1.00603 1.69835 1.28620 1.05234 1.38497 0.86375 0.78527 0.79879 0.82379 1.19657 1.20100 1.18476 1.20309 0.96734 1.09803 0.93144 1.20673 0.94979 0.97072 0.95987 0.92951 0.93290 0.92748 0.92674 0.91839 0.89935 0.89351 0.86379 0.91026 0.92429 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.12 37.16 0.34 -1.60 16 2 C -0.10 -1.69 3.68 -89.19 -0.33 -2.02 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.07 -1.28 6.32 -26.82 -0.17 -1.45 16 5 C -0.08 -1.91 6.13 -104.23 -0.64 -2.55 16 6 C -0.23 -5.33 10.04 -39.22 -0.39 -5.72 16 7 C -0.11 -2.60 10.02 -39.71 -0.40 -3.00 16 8 C -0.17 -4.44 8.69 -38.91 -0.34 -4.78 16 9 C 0.12 3.36 5.57 -106.79 -0.60 2.77 16 10 C -0.46 -12.44 8.83 -37.74 -0.33 -12.77 16 11 H 0.08 1.99 7.63 -52.48 -0.40 1.58 16 12 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 13 N -0.80 -20.98 10.97 55.55 0.61 -20.37 16 14 Si 0.90 18.96 29.59 -169.99 -5.03 13.93 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 18 C -0.20 -4.94 6.06 -103.52 -0.63 -5.57 16 19 C -0.05 -1.04 5.93 -26.84 -0.16 -1.20 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 1.12 7.83 -51.93 -0.41 0.72 16 25 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 27 H 0.12 3.24 6.18 -52.49 -0.32 2.92 16 28 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 29 H 0.06 1.19 7.89 -51.93 -0.41 0.78 16 30 H 0.05 1.12 7.97 -51.93 -0.41 0.70 16 LS Contribution 249.96 15.07 3.77 3.77 Total: -1.00 -27.88 249.96 -8.43 -36.31 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.04 Total: 2.40 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: -3.73 Total: -36.04 kcal Atomic # 7 Polarization: -20.98 SS G_CDS: 0.61 Total: -20.37 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.88 -8.43 -36.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791102.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.640 kcal (2) G-P(sol) polarization free energy of solvation -27.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds