Wall clock time and date at job start Mon Mar 30 2020 20:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32673 * 125.58881 * 2 1 4 4 N 1.38786 * 107.71553 * 180.02562 * 3 2 1 5 5 C 1.37204 * 145.44983 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.54029 * 359.97438 * 5 4 3 7 7 C 1.50700 * 109.47266 * 265.00134 * 6 5 4 8 8 H 1.07999 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99792 * 359.72305 * 9 7 6 11 11 Si 1.86795 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47088 * 89.99795 * 11 9 7 13 13 H 1.48495 * 109.47293 * 209.99997 * 11 9 7 14 14 H 1.48507 * 109.47015 * 329.99955 * 11 9 7 15 15 C 1.34670 * 106.91523 * 180.25806 * 5 4 3 16 16 N 1.34173 * 108.30503 * 359.58812 * 15 5 4 17 17 C 1.31482 * 109.33371 * 0.41280 * 16 15 5 18 18 O 1.35054 * 144.36824 * 179.73679 * 17 16 15 19 19 H 1.09003 * 109.47232 * 89.99797 * 1 2 3 20 20 H 1.08992 * 109.47176 * 209.99882 * 1 2 3 21 21 H 1.08995 * 109.47468 * 330.00369 * 1 2 3 22 22 H 1.07999 * 126.14736 * 0.02562 * 3 2 1 23 23 H 1.09004 * 109.47205 * 145.00227 * 6 5 4 24 24 H 1.08997 * 109.47395 * 25.00719 * 6 5 4 25 25 H 0.97000 * 119.99468 * 179.97438 * 10 9 7 26 26 H 1.07996 * 125.84525 * 179.74075 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2791 1.0789 0.0000 4 7 3.6000 0.6530 -0.0006 5 6 4.9143 1.0467 -0.0006 6 6 5.4263 2.4640 -0.0003 7 6 5.7133 2.8948 -1.4156 8 1 5.5417 2.2108 -2.2336 9 6 6.1951 4.1622 -1.6663 10 7 6.3989 4.9970 -0.6706 11 14 6.5501 4.6964 -3.4206 12 1 5.3326 5.3126 -4.0065 13 1 7.6561 5.6874 -3.4222 14 1 6.9439 3.5139 -4.2281 15 6 5.6594 -0.0751 -0.0074 16 7 4.8315 -1.1309 -0.0022 17 6 3.5866 -0.7079 -0.0014 18 8 2.2941 -1.0997 -0.0013 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 1.9406 2.1045 0.0004 23 1 6.3416 2.5196 0.5890 24 1 4.6740 3.1221 0.4343 25 1 6.7382 5.8885 -0.8470 26 1 6.7385 -0.1175 -0.0132 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088168.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:32 Heat of formation + Delta-G solvation = 60.739058 kcal Electronic energy + Delta-G solvation = -12833.117612 eV Core-core repulsion = 10493.539871 eV Total energy + Delta-G solvation = -2339.577741 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.95165 -40.98728 -35.63337 -35.30393 -32.89517 -32.45348 -28.54606 -27.57996 -25.18795 -23.38688 -22.65611 -21.61010 -18.72254 -18.17861 -17.72911 -17.17749 -16.37900 -15.91778 -15.12811 -14.89933 -14.37973 -14.17725 -14.04677 -13.72598 -13.61205 -13.07303 -12.74328 -12.67974 -12.40572 -12.04366 -11.63551 -11.17922 -10.64536 -9.56176 -9.08553 -8.24045 -6.39489 0.35952 0.90910 1.21905 1.38973 1.40658 1.52181 1.69879 1.92007 2.39187 3.05956 3.34908 3.60214 3.98053 4.15745 4.43348 4.51914 4.60824 4.72556 4.94305 5.07471 5.17234 5.22084 5.53835 5.65387 5.72531 6.05882 6.25013 6.69181 6.76530 7.29814 8.83378 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.041115 B = 0.008864 C = 0.008087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.854512 B = 3158.181078 C = 3461.575077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.025 3.975 3 C -0.063 4.063 4 N -0.434 5.434 5 C 0.006 3.994 6 C 0.102 3.898 7 C -0.534 4.534 8 H 0.048 0.952 9 C 0.015 3.985 10 N -0.924 5.924 11 Si 0.965 3.035 12 H -0.272 1.272 13 H -0.276 1.276 14 H -0.270 1.270 15 C -0.005 4.005 16 N -0.487 5.487 17 C 0.294 3.706 18 O -0.181 6.181 19 H 0.108 0.892 20 H 0.101 0.899 21 H 0.123 0.877 22 H 0.210 0.790 23 H 0.034 0.966 24 H 0.006 0.994 25 H 0.269 0.731 26 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 -5.817 0.750 13.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.024 4.024 3 C -0.178 4.178 4 N -0.121 5.121 5 C -0.106 4.106 6 C 0.064 3.936 7 C -0.572 4.572 8 H 0.066 0.934 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.789 3.211 12 H -0.197 1.197 13 H -0.201 1.201 14 H -0.194 1.194 15 C -0.150 4.150 16 N -0.223 5.223 17 C 0.001 3.999 18 O -0.077 6.077 19 H 0.126 0.874 20 H 0.119 0.881 21 H 0.141 0.859 22 H 0.226 0.774 23 H 0.052 0.948 24 H 0.024 0.976 25 H 0.078 0.922 26 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.661 -6.527 0.804 13.387 hybrid contribution 0.380 1.346 -0.685 1.557 sum -11.281 -5.181 0.118 12.414 Atomic orbital electron populations 1.20715 0.78250 1.06849 1.06112 1.23383 0.96454 0.80080 1.02448 1.22548 0.79002 1.02827 1.13397 1.44470 1.06554 1.09835 1.51267 1.21578 0.79059 0.99814 1.10114 1.17507 0.95319 0.83640 0.97140 1.21265 1.44691 0.98865 0.92397 0.93395 1.25813 0.94738 0.96237 1.01684 1.70046 1.45659 1.07495 1.33090 0.85443 0.78210 0.78162 0.79236 1.19732 1.20081 1.19421 1.22447 0.99949 0.84800 1.07772 1.70210 0.93346 1.31260 1.27512 1.22439 0.87691 0.79774 1.09954 1.84544 1.09732 1.32766 1.80665 0.87358 0.88069 0.85870 0.77360 0.94757 0.97582 0.92236 0.77886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.40 71.24 0.74 -0.03 15 2 C 0.03 0.67 7.27 24.52 0.18 0.85 15 3 C -0.06 -2.06 11.83 82.42 0.98 -1.09 15 4 N -0.43 -18.68 3.57 -456.70 -1.63 -20.31 15 5 C 0.01 0.27 6.44 40.90 0.26 0.53 15 6 C 0.10 5.40 5.53 29.10 0.16 5.56 15 7 C -0.53 -30.11 9.09 25.60 0.23 -29.87 15 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 15 9 C 0.01 0.81 5.46 84.66 0.46 1.27 15 10 N -0.92 -53.52 13.29 21.45 0.28 -53.24 15 11 Si 0.97 43.33 29.54 68.60 2.03 45.35 15 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 13 H -0.28 -11.93 7.11 99.48 0.71 -11.23 15 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 15 C -0.01 -0.24 11.77 83.52 0.98 0.74 15 16 N -0.49 -21.91 11.29 -313.91 -3.54 -25.45 15 17 C 0.29 12.54 9.78 179.64 1.76 14.30 15 18 O -0.18 -6.32 10.77 -19.48 -0.21 -6.53 15 19 H 0.11 1.00 8.14 -2.39 -0.02 0.98 15 20 H 0.10 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.12 0.91 8.14 -2.39 -0.02 0.90 15 22 H 0.21 5.69 8.06 -2.91 -0.02 5.67 15 23 H 0.03 1.87 8.14 -2.38 -0.02 1.85 15 24 H 0.01 0.33 8.14 -2.39 -0.02 0.31 15 25 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15 26 H 0.20 7.93 8.06 -2.91 -0.02 7.90 15 Total: -1.00 -70.23 240.22 3.87 -66.36 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.18 Total: 1.56 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 5.75 Total: -7.74 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -4.89 Total: -99.00 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.21 Total: -6.53 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.23 3.87 -66.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088168.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.104 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds