Wall clock time and date at job start Mon Mar 30 2020 20:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32675 * 125.59789 * 2 1 4 4 N 1.38769 * 107.72062 * 180.12776 * 3 2 1 5 5 C 1.37212 * 145.45162 * 180.02562 * 4 3 2 6 6 C 1.34669 * 106.91804 * 179.63406 * 5 4 3 7 7 C 1.50697 * 125.84807 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46923 * 125.03584 * 7 6 5 9 9 H 1.07994 * 120.00077 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99519 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00248 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99497 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47253 * 89.99983 * 12 10 8 14 14 H 1.48507 * 109.46827 * 209.99794 * 12 10 8 15 15 H 1.48497 * 109.46914 * 329.99578 * 12 10 8 16 16 N 1.34172 * 108.30422 * 0.02563 * 6 5 4 17 17 C 1.31480 * 109.33639 * 359.97438 * 16 6 5 18 18 O 1.35053 * 144.37213 * 180.02562 * 17 16 6 19 19 H 1.08993 * 109.47614 * 180.22423 * 1 2 3 20 20 H 1.09007 * 109.46946 * 300.21793 * 1 2 3 21 21 H 1.09005 * 109.47527 * 60.21392 * 1 2 3 22 22 H 1.08007 * 126.13823 * 359.81807 * 3 2 1 23 23 H 1.08005 * 126.53790 * 359.61348 * 5 4 3 24 24 H 1.08992 * 109.47262 * 245.04124 * 7 6 5 25 25 H 1.09005 * 109.46987 * 5.04077 * 7 6 5 26 26 H 0.97001 * 119.99669 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2793 1.0788 0.0000 4 7 3.6000 0.6528 -0.0029 5 6 4.9144 1.0464 -0.0045 6 6 5.6594 -0.0754 0.0006 7 6 7.1652 -0.1348 0.0005 8 6 7.6352 -0.9642 1.1677 9 1 6.9156 -1.4046 1.8417 10 6 8.9842 -1.1607 1.3749 11 7 9.8606 -0.6248 0.5537 12 14 9.5667 -2.1895 2.8212 13 1 9.6765 -3.6108 2.4054 14 1 10.8949 -1.7018 3.2724 15 1 8.5921 -2.0735 3.9355 16 7 4.8314 -1.1311 0.0045 17 6 3.5865 -0.7081 0.0027 18 8 2.2941 -1.0997 0.0043 19 1 -0.3634 -1.0276 0.0040 20 1 -0.3633 0.5173 0.8881 21 1 -0.3634 0.5105 -0.8919 22 1 1.9408 2.1045 -0.0028 23 1 5.2814 2.0622 -0.0092 24 1 7.5110 -0.5867 -0.9291 25 1 7.5686 0.8743 0.0861 26 1 10.8095 -0.7628 0.6997 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260553897.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:49 Heat of formation + Delta-G solvation = 88.794352 kcal Electronic energy + Delta-G solvation = -12632.553873 eV Core-core repulsion = 10294.192701 eV Total energy + Delta-G solvation = -2338.361173 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.52657 -39.50813 -34.26612 -33.11262 -31.86130 -29.73916 -28.08115 -25.72139 -23.15615 -21.89057 -21.33163 -19.48313 -16.97953 -16.90669 -16.20630 -15.66707 -14.65859 -14.28211 -13.82899 -13.59036 -12.98277 -12.95185 -12.54821 -12.25409 -11.98813 -11.47762 -10.89352 -10.65414 -10.52108 -9.82657 -9.38683 -9.15370 -8.34509 -8.04202 -7.58974 -5.93670 -3.93601 1.53979 2.27918 2.64312 2.98270 3.40893 3.45833 3.50861 3.74340 4.44103 4.56434 4.78484 4.90305 5.15044 5.22766 5.30944 5.43066 5.64676 5.93380 6.14541 6.49552 6.61245 7.41179 7.42688 7.64985 7.78477 8.04480 8.40467 8.62841 9.10298 9.68525 11.17429 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.070147 B = 0.007094 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.064506 B = 3945.957218 C = 4177.427820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.003 4.003 3 C -0.035 4.035 4 N -0.439 5.439 5 C -0.098 4.098 6 C 0.111 3.889 7 C 0.091 3.909 8 C -0.500 4.500 9 H 0.060 0.940 10 C 0.055 3.945 11 N -0.900 5.900 12 Si 0.897 3.103 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.275 1.275 16 N -0.447 5.447 17 C 0.321 3.679 18 O -0.175 6.175 19 H 0.084 0.916 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.187 0.813 23 H 0.178 0.822 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.065 5.130 -1.389 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.054 4.054 3 C -0.152 4.152 4 N -0.127 5.127 5 C -0.223 4.223 6 C -0.017 4.017 7 C 0.053 3.947 8 C -0.539 4.539 9 H 0.078 0.922 10 C -0.145 4.145 11 N -0.540 5.540 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.200 1.200 16 N -0.182 5.182 17 C 0.029 3.971 18 O -0.071 6.071 19 H 0.103 0.897 20 H 0.108 0.892 21 H 0.108 0.892 22 H 0.205 0.795 23 H 0.195 0.805 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.766 4.280 -1.415 17.362 hybrid contribution 0.102 0.448 0.791 0.915 sum -16.664 4.728 -0.624 17.333 Atomic orbital electron populations 1.20311 0.83287 1.04851 1.03897 1.22155 0.94579 0.82200 1.06451 1.21782 0.80636 1.00579 1.12167 1.44421 1.05485 1.10193 1.52579 1.22009 0.77711 1.01424 1.21176 1.21972 0.98069 0.84796 0.96845 1.17829 0.79662 0.98557 0.98646 1.21057 0.91545 1.30794 1.10487 0.92168 1.24979 0.96725 0.96092 0.96730 1.69949 1.01551 1.45104 1.37359 0.86502 0.77761 0.80536 0.82677 1.20597 1.21340 1.19953 1.70552 0.91649 1.30853 1.25189 1.22660 0.86867 0.79136 1.08470 1.84534 1.11061 1.31177 1.80336 0.89730 0.89158 0.89168 0.79545 0.80531 0.94093 0.94148 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.00 0.37 -0.07 15 2 C 0.00 -0.04 7.27 -36.20 -0.26 -0.31 15 3 C -0.03 -0.47 11.83 -16.30 -0.19 -0.66 15 4 N -0.44 -8.26 3.57 -64.77 -0.23 -8.50 15 5 C -0.10 -1.99 11.92 -16.41 -0.20 -2.19 15 6 C 0.11 2.69 6.29 -82.83 -0.52 2.17 15 7 C 0.09 2.45 5.54 -29.03 -0.16 2.29 15 8 C -0.50 -14.80 9.08 -34.44 -0.31 -15.11 15 9 H 0.06 1.82 7.74 -52.49 -0.41 1.42 15 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 11 N -0.90 -27.11 13.29 55.43 0.74 -26.37 15 12 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 15 13 H -0.28 -6.97 7.11 56.52 0.40 -6.56 15 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 15 H -0.27 -6.82 7.11 56.52 0.40 -6.42 15 16 N -0.45 -11.19 11.26 -10.88 -0.12 -11.31 15 17 C 0.32 6.89 9.78 -88.59 -0.87 6.02 15 18 O -0.18 -3.13 10.77 0.97 0.01 -3.11 15 19 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 20 H 0.09 0.43 8.14 -51.92 -0.42 0.01 15 21 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 15 22 H 0.19 1.66 8.06 -52.48 -0.42 1.24 15 23 H 0.18 2.99 8.06 -52.48 -0.42 2.57 15 24 H 0.04 1.17 8.14 -51.93 -0.42 0.74 15 25 H 0.04 1.07 8.11 -51.93 -0.42 0.65 15 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 240.14 15.07 3.62 3.62 Total: -1.00 -34.60 240.14 -5.74 -40.34 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: -2.50 Total: -5.82 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.23 Total: -6.33 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.38 Total: -46.18 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: 0.01 Total: -3.11 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -34.60 -5.74 -40.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553897.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.133 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds