Wall clock time and date at job start Mon Mar 30 2020 20:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21253 * 119.99930 * 95.00039 * 12 2 1 14 14 C 1.47155 * 120.00166 * 275.00518 * 12 2 1 15 15 C 1.40221 * 120.96883 * 359.71196 * 14 12 2 16 16 N 1.32105 * 118.88960 * 179.74228 * 15 14 12 17 17 C 1.31891 * 120.99285 * 0.57336 * 16 15 14 18 18 N 1.31893 * 122.16650 * 359.67863 * 17 16 15 19 19 C 1.32103 * 120.99590 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08005 * 120.55223 * 0.02562 * 15 14 12 25 25 H 1.08003 * 118.91267 * 179.69865 * 17 16 15 26 26 H 1.07995 * 120.55292 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.3207 -1.8868 1.1761 14 6 2.1728 0.0239 2.4981 15 6 1.8508 1.3860 2.5825 16 7 1.9875 2.0035 3.7423 17 6 2.4295 1.3608 4.8059 18 7 2.7489 0.0816 4.7710 19 6 2.6383 -0.6170 3.6552 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 1.4926 1.9203 1.7148 25 1 2.5329 1.8998 5.7361 26 1 2.9015 -1.6642 3.6348 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306654219.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:20 Heat of formation + Delta-G solvation = 4.227301 kcal Electronic energy + Delta-G solvation = -12810.552473 eV Core-core repulsion = 10468.524197 eV Total energy + Delta-G solvation = -2342.028275 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.86799 -38.38027 -34.10779 -33.51771 -32.13910 -30.37248 -25.40365 -25.28803 -24.35617 -22.35920 -19.19257 -17.65823 -17.33064 -16.24127 -15.57097 -14.79547 -14.74899 -13.87668 -13.57713 -13.38074 -13.29410 -12.55665 -11.68849 -11.43135 -11.12315 -10.86517 -10.78332 -10.72786 -10.36394 -10.15202 -9.45624 -9.20914 -9.09892 -8.69284 -8.43388 -6.13238 -4.18752 0.59551 1.16907 3.02022 3.27231 3.33858 3.40037 4.00647 4.15193 4.27047 4.34485 4.63738 4.82260 5.10524 5.20127 5.44774 5.93067 6.28340 6.41953 6.56990 6.72590 6.84618 6.98331 7.33834 7.66123 7.88618 8.08548 8.09643 8.40951 8.86217 9.46991 10.93655 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.058190 B = 0.008523 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.066435 B = 3284.611299 C = 3533.690908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.007 3.993 3 H 0.053 0.947 4 C -0.510 4.510 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.272 1.272 11 H -0.286 1.286 12 C 0.406 3.594 13 O -0.453 6.453 14 C -0.257 4.257 15 C 0.195 3.805 16 N -0.529 5.529 17 C 0.299 3.701 18 N -0.532 5.532 19 C 0.188 3.812 20 H 0.034 0.966 21 H 0.013 0.987 22 H 0.097 0.903 23 H 0.263 0.737 24 H 0.184 0.816 25 H 0.195 0.805 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.759 1.765 9.106 9.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.012 4.012 3 H 0.071 0.929 4 C -0.548 4.548 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.282 3.718 13 O -0.327 6.327 14 C -0.262 4.262 15 C 0.029 3.971 16 N -0.242 5.242 17 C 0.012 3.988 18 N -0.246 5.246 19 C 0.023 3.977 20 H 0.053 0.947 21 H 0.032 0.968 22 H 0.116 0.884 23 H 0.073 0.927 24 H 0.201 0.799 25 H 0.212 0.788 26 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.922 1.752 9.812 10.010 hybrid contribution 0.205 -0.732 -1.548 1.725 sum 1.128 1.020 8.264 8.403 Atomic orbital electron populations 1.21706 0.95627 1.00259 1.01220 1.19162 0.94589 0.97204 0.90245 0.92908 1.21043 1.31707 1.12805 0.89238 0.91333 1.24933 0.94860 0.94968 0.99135 1.69849 1.36519 1.22864 1.23804 0.86463 0.78541 0.80261 0.82062 1.20579 1.19695 1.21129 1.23237 0.72651 0.87974 0.87926 1.90386 1.38151 1.17828 1.86310 1.23007 1.05469 0.98119 0.99640 1.23907 0.87102 0.90666 0.95449 1.68491 1.15308 1.40250 1.00190 1.25135 0.88664 0.87886 0.97082 1.68450 1.18002 1.09175 1.28946 1.23629 0.87167 1.00432 0.86505 0.94679 0.96788 0.88429 0.92730 0.79942 0.78800 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.95 37.16 0.33 -2.56 15 2 C 0.01 0.16 1.98 -92.93 -0.18 -0.02 15 3 H 0.05 1.23 6.81 -51.92 -0.35 0.87 15 4 C -0.51 -13.71 8.33 -34.44 -0.29 -13.99 15 5 H 0.07 1.92 7.03 -52.49 -0.37 1.55 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 15 7 N -0.89 -24.03 11.32 55.43 0.63 -23.40 15 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 15 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 12 C 0.41 8.61 6.23 -30.69 -0.19 8.42 15 13 O -0.45 -10.59 15.90 5.58 0.09 -10.50 15 14 C -0.26 -4.51 5.90 -104.79 -0.62 -5.12 15 15 C 0.19 3.14 10.64 -16.69 -0.18 2.96 15 16 N -0.53 -7.97 10.42 -14.17 -0.15 -8.12 15 17 C 0.30 4.02 12.27 -91.99 -1.13 2.89 15 18 N -0.53 -7.91 10.42 -14.17 -0.15 -8.06 15 19 C 0.19 3.00 10.88 -16.69 -0.18 2.82 15 20 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 22 H 0.10 2.37 6.07 -51.93 -0.32 2.06 15 23 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 24 H 0.18 2.81 6.61 -52.48 -0.35 2.46 15 25 H 0.20 1.80 8.06 -52.48 -0.42 1.38 15 26 H 0.18 2.55 7.74 -52.49 -0.41 2.15 15 LS Contribution 236.32 15.07 3.56 3.56 Total: -1.00 -28.97 236.32 -5.76 -34.73 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -2.19 Total: -1.12 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.53 Total: -3.04 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.33 Total: -39.57 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.97 -5.76 -34.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306654219.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.960 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds