Wall clock time and date at job start Mon Mar 30 2020 20:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21253 * 119.99930 * 95.00039 * 12 2 1 14 14 C 1.47155 * 120.00166 * 275.00518 * 12 2 1 15 15 C 1.40221 * 120.96883 * 359.71196 * 14 12 2 16 16 N 1.32105 * 118.88960 * 179.74228 * 15 14 12 17 17 C 1.31891 * 120.99285 * 0.57336 * 16 15 14 18 18 N 1.31893 * 122.16650 * 359.67863 * 17 16 15 19 19 C 1.32103 * 120.99590 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08005 * 120.55223 * 0.02562 * 15 14 12 25 25 H 1.08003 * 118.91267 * 179.69865 * 17 16 15 26 26 H 1.07995 * 120.55292 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.3207 -1.8868 1.1761 14 6 2.1728 0.0239 2.4981 15 6 1.8508 1.3860 2.5825 16 7 1.9875 2.0035 3.7423 17 6 2.4295 1.3608 4.8059 18 7 2.7489 0.0816 4.7710 19 6 2.6383 -0.6170 3.6552 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 1.4926 1.9203 1.7148 25 1 2.5329 1.8998 5.7361 26 1 2.9015 -1.6642 3.6348 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306654219.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:20 Heat of formation + Delta-G solvation = -13.173633 kcal Electronic energy + Delta-G solvation = -12811.307034 eV Core-core repulsion = 10468.524197 eV Total energy + Delta-G solvation = -2342.782836 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.12876 -40.02773 -35.92250 -34.84088 -33.59540 -32.16186 -27.27906 -26.79319 -25.60713 -24.00025 -20.84547 -18.95070 -18.65129 -18.02282 -17.25053 -16.62701 -16.12177 -15.49417 -15.01848 -14.86050 -14.66621 -14.25561 -13.52914 -13.04732 -12.79439 -12.70732 -12.56616 -12.22263 -12.09678 -11.93709 -11.07486 -10.77020 -10.57607 -10.43795 -10.21643 -8.15970 -6.27748 -0.68965 -0.06600 1.41180 1.43025 1.47980 1.54603 2.41524 2.74665 3.01832 3.06699 3.14943 3.24179 3.50396 3.80864 4.36155 4.54194 4.74357 4.77400 4.95060 5.02130 5.25006 5.47303 5.68942 5.75233 5.93747 6.18903 6.68444 6.79809 6.91471 7.40255 8.89143 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.058190 B = 0.008523 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.066435 B = 3284.611299 C = 3533.690908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.000 4.000 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.048 0.952 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.414 3.586 13 O -0.485 6.485 14 C -0.277 4.277 15 C 0.202 3.798 16 N -0.535 5.535 17 C 0.312 3.688 18 N -0.536 5.536 19 C 0.198 3.802 20 H 0.022 0.978 21 H 0.046 0.954 22 H 0.076 0.924 23 H 0.266 0.734 24 H 0.187 0.813 25 H 0.240 0.760 26 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.922 2.516 10.313 10.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.019 4.019 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.292 3.708 13 O -0.362 6.362 14 C -0.282 4.282 15 C 0.036 3.964 16 N -0.248 5.248 17 C 0.027 3.973 18 N -0.249 5.249 19 C 0.032 3.968 20 H 0.042 0.958 21 H 0.065 0.935 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.203 0.797 25 H 0.256 0.744 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.082 2.525 11.033 11.369 hybrid contribution 0.163 -0.902 -1.827 2.044 sum 1.245 1.623 9.206 9.430 Atomic orbital electron populations 1.21533 0.94896 0.99590 1.01730 1.19154 0.95280 0.96999 0.90467 0.92917 1.21247 1.32103 1.12690 0.91223 0.93398 1.25551 0.95046 0.95646 1.01354 1.69925 1.36782 1.23425 1.24435 0.85642 0.78418 0.78854 0.79289 1.19889 1.20310 1.20243 1.23043 0.71506 0.87464 0.88758 1.90367 1.39840 1.19013 1.86944 1.22536 1.08687 0.98606 0.98392 1.23954 0.86242 0.89994 0.96173 1.68615 1.15927 1.40146 1.00139 1.26078 0.85811 0.87468 0.97974 1.68594 1.18437 1.09846 1.28054 1.23762 0.85950 1.00905 0.86228 0.95828 0.93533 0.90533 0.92489 0.79662 0.74392 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.95 71.98 0.64 -4.67 15 2 C 0.00 0.00 1.98 -12.29 -0.02 -0.03 15 3 H 0.05 2.47 6.81 -2.38 -0.02 2.45 15 4 C -0.53 -29.27 8.33 25.60 0.21 -29.05 15 5 H 0.05 2.76 7.03 -2.91 -0.02 2.74 15 6 C 0.02 1.28 5.30 84.66 0.45 1.73 15 7 N -0.91 -48.93 11.32 21.45 0.24 -48.68 15 8 Si 0.95 43.13 29.54 68.60 2.03 45.16 15 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 12 C 0.41 17.63 6.23 28.03 0.17 17.80 15 13 O -0.49 -23.09 15.90 -2.95 -0.05 -23.14 15 14 C -0.28 -9.40 5.90 -19.97 -0.12 -9.51 15 15 C 0.20 6.16 10.64 85.13 0.91 7.07 15 16 N -0.53 -14.54 10.42 -198.75 -2.07 -16.61 15 17 C 0.31 7.22 12.27 180.83 2.22 9.44 15 18 N -0.54 -14.36 10.42 -198.75 -2.07 -16.43 15 19 C 0.20 5.95 10.88 85.14 0.93 6.88 15 20 H 0.02 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.08 3.74 6.07 -2.39 -0.01 3.72 15 23 H 0.27 13.63 8.31 -92.71 -0.77 12.86 15 24 H 0.19 5.45 6.61 -2.91 -0.02 5.43 15 25 H 0.24 3.20 8.06 -2.91 -0.02 3.18 15 26 H 0.18 5.11 7.74 -2.91 -0.02 5.09 15 Total: -1.00 -61.29 236.32 4.67 -56.62 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.20 Total: 3.43 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 5.39 Total: -0.34 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -3.90 Total: -81.72 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -61.29 4.67 -56.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306654219.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.451 kcal (2) G-P(sol) polarization free energy of solvation -61.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds