Wall clock time and date at job start Mon Mar 30 2020 20:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46924 * 255.84884 * 3 2 1 5 5 C 1.36935 * 120.00122 * 264.46017 * 4 3 2 6 6 H 1.08007 * 119.99994 * 197.04033 * 5 4 3 7 7 C 1.38810 * 120.00241 * 17.03250 * 5 4 3 8 8 N 1.31621 * 119.99434 * 22.23931 * 7 5 4 9 9 Si 1.86793 * 120.00278 * 202.23912 * 7 5 4 10 10 H 1.48495 * 109.47288 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47096 * 120.00503 * 9 7 5 12 12 H 1.48504 * 109.47441 * 239.99974 * 9 7 5 13 13 C 1.46501 * 119.99888 * 84.46149 * 4 3 2 14 14 C 1.50698 * 109.47299 * 269.99748 * 13 4 3 15 15 C 1.34513 * 125.78968 * 89.99665 * 14 13 4 16 16 C 1.41382 * 106.84274 * 180.02562 * 15 14 13 17 17 C 1.34513 * 106.84096 * 0.02562 * 16 15 14 18 18 O 1.34300 * 125.79078 * 269.69739 * 14 13 4 19 19 H 1.09001 * 109.47157 * 135.85381 * 3 2 1 20 20 H 1.08998 * 109.47432 * 15.84634 * 3 2 1 21 21 H 0.97003 * 119.99858 * 179.97438 * 8 7 5 22 22 H 1.08998 * 109.47395 * 30.00189 * 13 4 3 23 23 H 1.08997 * 109.47102 * 149.99676 * 13 4 3 24 24 H 1.07998 * 126.57951 * 0.04229 * 15 14 13 25 25 H 1.07998 * 126.57788 * 179.97438 * 16 15 14 26 26 H 1.07996 * 125.79275 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0961 0.3386 1.3394 5 6 3.4316 1.6317 1.6397 6 1 4.0388 1.8445 2.5073 7 6 2.9917 2.6692 0.8292 8 7 1.9351 2.5023 0.0623 9 14 3.8991 4.3019 0.8268 10 1 5.0451 4.2327 1.7687 11 1 4.4002 4.5877 -0.5416 12 1 2.9738 5.3832 1.2509 13 6 3.2252 -0.7071 2.3573 14 6 1.9361 -0.8180 3.1299 15 6 0.8989 -1.6160 2.8191 16 6 -0.0919 -1.4026 3.8048 17 6 0.3988 -0.4865 4.6587 18 8 1.6303 -0.1410 4.2488 19 1 2.9709 0.7382 -0.7158 20 1 2.9718 -0.9878 -0.2806 21 1 1.6273 3.2274 -0.5039 22 1 3.4424 -1.6597 1.8742 23 1 4.0366 -0.4522 3.0390 24 1 0.8353 -2.2906 1.9781 25 1 -1.0579 -1.8824 3.8608 26 1 -0.1087 -0.0990 5.5297 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308416757.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:40 Heat of formation + Delta-G solvation = 50.322255 kcal Electronic energy + Delta-G solvation = -13208.933565 eV Core-core repulsion = 10868.904117 eV Total energy + Delta-G solvation = -2340.029448 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.22639 -38.24234 -36.13400 -33.97485 -33.42243 -31.10866 -28.83846 -27.10369 -23.78057 -22.50144 -21.18715 -19.32934 -18.19876 -17.89218 -16.98434 -16.52428 -15.68234 -15.56493 -15.00895 -14.04141 -14.02839 -13.60210 -13.53557 -13.43055 -13.05063 -12.98834 -12.75730 -12.28628 -11.98589 -11.86314 -11.70892 -10.69959 -10.68036 -9.32007 -9.07507 -7.96398 -5.35083 0.99533 1.50719 1.55586 1.64488 1.84282 2.35632 2.39861 2.55798 2.64603 3.25752 3.78627 3.94629 4.13148 4.26501 4.32382 4.61625 4.85696 4.97481 5.06363 5.12740 5.26159 5.41117 5.67505 5.77373 6.19985 6.43272 7.00923 7.39643 7.70215 8.09291 9.09405 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.034465 B = 0.012555 C = 0.011087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.215697 B = 2229.585505 C = 2524.920868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C 0.256 3.744 3 C 0.252 3.748 4 N -0.578 5.578 5 C -0.263 4.263 6 H 0.085 0.915 7 C -0.042 4.042 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.285 1.285 12 H -0.309 1.309 13 C 0.206 3.794 14 C -0.024 4.024 15 C -0.231 4.231 16 C -0.229 4.229 17 C -0.068 4.068 18 O -0.195 6.195 19 H 0.100 0.900 20 H 0.116 0.884 21 H 0.250 0.750 22 H 0.121 0.879 23 H 0.082 0.918 24 H 0.138 0.862 25 H 0.155 0.845 26 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -7.274 4.267 9.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.224 5.224 2 C -0.062 4.062 3 C 0.123 3.877 4 N -0.297 5.297 5 C -0.393 4.393 6 H 0.102 0.898 7 C -0.238 4.238 8 N -0.572 5.572 9 Si 0.797 3.203 10 H -0.187 1.187 11 H -0.211 1.211 12 H -0.237 1.237 13 C 0.080 3.920 14 C -0.078 4.078 15 C -0.251 4.251 16 C -0.248 4.248 17 C -0.135 4.135 18 O -0.091 6.091 19 H 0.118 0.882 20 H 0.134 0.866 21 H 0.059 0.941 22 H 0.139 0.861 23 H 0.100 0.900 24 H 0.156 0.844 25 H 0.173 0.827 26 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.728 -6.941 4.297 8.607 hybrid contribution -0.269 1.223 -0.096 1.256 sum 2.460 -5.718 4.201 7.510 Atomic orbital electron populations 1.80787 1.15818 1.14764 1.11053 1.31026 0.96926 0.87874 0.90346 1.18748 0.78836 1.01729 0.88422 1.44684 1.72585 1.05373 1.07034 1.19653 1.25128 0.83183 1.11338 0.89765 1.25576 0.96798 1.00947 1.00488 1.70098 1.22873 1.33349 1.30920 0.85209 0.78176 0.79308 0.77638 1.18685 1.21111 1.23750 1.20138 0.88712 0.94125 0.89043 1.24730 1.02294 0.93416 0.87317 1.21574 0.95068 1.05807 1.02647 1.22023 1.01823 1.03298 0.97617 1.24556 0.84998 1.00793 1.03166 1.84038 1.31966 1.55988 1.37106 0.88227 0.86607 0.94068 0.86112 0.89965 0.84369 0.82692 0.75719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -28.13 18.54 20.00 0.37 -27.76 15 2 C 0.26 12.11 12.63 89.44 1.13 13.24 15 3 C 0.25 10.13 5.45 84.57 0.46 10.59 15 4 N -0.58 -24.61 2.49 -716.92 -1.78 -26.40 15 5 C -0.26 -12.85 9.66 84.03 0.81 -12.04 15 6 H 0.08 4.04 7.90 -2.91 -0.02 4.02 15 7 C -0.04 -2.16 4.85 84.86 0.41 -1.75 15 8 N -0.93 -51.09 9.49 21.65 0.21 -50.89 15 9 Si 0.97 42.30 29.61 68.60 2.03 44.33 15 10 H -0.26 -10.80 7.11 99.48 0.71 -10.10 15 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 12 H -0.31 -14.33 7.11 99.48 0.71 -13.62 15 13 C 0.21 7.19 6.23 85.63 0.53 7.72 15 14 C -0.02 -0.95 6.62 24.83 0.16 -0.79 15 15 C -0.23 -8.80 10.07 22.19 0.22 -8.57 15 16 C -0.23 -8.15 10.91 22.19 0.24 -7.91 15 17 C -0.07 -2.36 12.09 66.97 0.81 -1.55 15 18 O -0.20 -8.03 10.65 -2.51 -0.03 -8.05 15 19 H 0.10 4.37 6.45 -2.39 -0.02 4.35 15 20 H 0.12 3.38 7.97 -2.39 -0.02 3.36 15 21 H 0.25 13.82 8.31 -92.71 -0.77 13.05 15 22 H 0.12 3.19 7.95 -2.39 -0.02 3.17 15 23 H 0.08 2.69 8.02 -2.39 -0.02 2.67 15 24 H 0.14 4.99 8.06 -2.91 -0.02 4.97 15 25 H 0.16 4.71 8.06 -2.91 -0.02 4.69 15 26 H 0.23 5.69 8.06 -2.91 -0.02 5.67 15 Total: -1.00 -65.92 241.39 6.77 -59.15 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.18 Total: 10.68 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 4.79 Total: -1.06 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -1.21 Total: -105.05 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.03 Total: -8.05 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -65.92 6.77 -59.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308416757.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.475 kcal (2) G-P(sol) polarization free energy of solvation -65.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds