Wall clock time and date at job start Mon Mar 30 2020 20:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46993 * 209.08966 * 3 2 1 5 5 H 1.09002 * 109.47558 * 304.99886 * 4 3 2 6 6 C 1.53000 * 109.47117 * 184.99988 * 4 3 2 7 7 N 1.46898 * 109.47228 * 64.99970 * 4 3 2 8 8 C 1.46897 * 111.00560 * 204.99735 * 7 4 3 9 9 C 1.52993 * 109.47593 * 175.38599 * 8 7 4 10 10 C 1.50699 * 115.56258 * 321.31407 * 9 8 7 11 11 H 1.07999 * 119.99948 * 99.63665 * 10 9 8 12 12 C 1.37873 * 120.00302 * 279.64592 * 10 9 8 13 13 N 1.31511 * 120.00173 * 8.68596 * 12 10 9 14 14 Si 1.86807 * 120.00144 * 188.69331 * 12 10 9 15 15 H 1.48497 * 109.47420 * 89.99522 * 14 12 10 16 16 H 1.48500 * 109.46912 * 209.99880 * 14 12 10 17 17 H 1.48496 * 109.46693 * 329.99276 * 14 12 10 18 18 C 1.53004 * 117.49948 * 175.62680 * 9 8 7 19 19 C 1.53004 * 60.03127 * 252.49562 * 18 9 8 20 20 H 4.44647 * 5.63394 * 179.97438 * 4 1 2 21 21 H 1.09000 * 109.47276 * 89.09014 * 3 2 1 22 22 H 1.09000 * 109.47757 * 329.08690 * 3 2 1 23 23 H 1.08995 * 109.47314 * 60.00497 * 6 4 3 24 24 H 1.09005 * 109.47164 * 180.02562 * 6 4 3 25 25 H 1.09003 * 109.47634 * 299.99911 * 6 4 3 26 26 H 1.00911 * 110.99726 * 81.04356 * 7 4 3 27 27 H 1.09000 * 109.46862 * 55.38315 * 8 7 4 28 28 H 1.09003 * 109.47008 * 295.38938 * 8 7 4 29 29 H 0.96996 * 120.00849 * 180.02562 * 13 12 10 30 30 H 1.08994 * 117.50118 * 0.02562 * 18 9 8 31 31 H 1.09005 * 117.49870 * 144.99806 * 18 9 8 32 32 H 1.09001 * 117.49603 * 107.49620 * 19 18 9 33 33 H 1.08991 * 117.50430 * 252.51997 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.2614 0.7013 5 1 2.7204 2.1416 0.2278 6 6 4.6802 1.3249 0.5924 7 7 2.7668 1.2249 2.1175 8 6 2.6873 2.5809 2.6768 9 6 2.1704 2.5100 4.1150 10 6 1.0867 1.4936 4.3671 11 1 1.3338 0.5386 4.8069 12 6 -0.2201 1.7826 4.0362 13 7 -0.4995 2.8678 3.3478 14 14 -1.5939 0.6328 4.5656 15 1 -2.1008 1.0478 5.8983 16 1 -2.6988 0.6928 3.5751 17 1 -1.0743 -0.7560 4.6440 18 6 2.1130 3.8158 4.9103 19 6 3.1753 2.7655 5.2411 20 1 -1.0502 -0.0002 -0.0003 21 1 3.0093 -0.0155 -1.0275 22 1 3.0098 -0.8808 0.5279 23 1 4.9685 1.3521 -0.4584 24 1 5.0431 2.2229 1.0924 25 1 5.1153 0.4448 1.0659 26 1 3.4010 0.6500 2.6518 27 1 2.0062 3.1828 2.0752 28 1 3.6778 3.0359 2.6688 29 1 -1.4189 3.0714 3.1153 30 1 2.4431 4.7255 4.4088 31 1 1.2912 3.9398 5.6156 32 1 4.2047 2.9842 4.9572 33 1 3.0523 2.1984 6.1637 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228940407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:33:15 Heat of formation + Delta-G solvation = 55.011374 kcal Electronic energy + Delta-G solvation = -13669.855399 eV Core-core repulsion = 11503.976814 eV Total energy + Delta-G solvation = -2165.878585 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.07229 -37.44268 -34.03821 -33.80318 -31.37196 -28.03794 -27.45213 -25.74826 -22.91956 -21.82506 -20.88456 -18.95872 -17.90914 -16.60771 -16.21461 -16.04394 -15.31035 -15.16625 -14.51539 -14.33167 -13.75801 -13.41383 -13.32787 -12.95330 -12.87282 -12.70552 -12.46241 -12.33696 -11.95817 -11.88967 -11.34313 -10.86732 -10.80158 -10.65997 -10.28493 -9.84488 -8.78634 -7.95126 -5.97376 1.41542 1.43801 1.51721 2.10874 2.16263 2.52488 3.35666 3.45315 3.63869 3.75026 4.20492 4.35549 4.46633 4.51524 4.56726 4.77073 4.82721 4.86099 4.89244 5.01508 5.02091 5.17059 5.21985 5.29637 5.33218 5.43523 5.64624 5.73806 5.94147 6.46752 6.66829 6.93842 6.98078 7.03925 7.66286 9.14782 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.022376 B = 0.014425 C = 0.009732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.059738 B = 1940.602757 C = 2876.442292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.172 4.172 3 C 0.004 3.996 4 C 0.086 3.914 5 H 0.052 0.948 6 C -0.169 4.169 7 N -0.666 5.666 8 C 0.130 3.870 9 C 0.023 3.977 10 C -0.467 4.467 11 H 0.044 0.956 12 C 0.037 3.963 13 N -0.905 5.905 14 Si 0.930 3.070 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.274 1.274 18 C -0.175 4.175 19 C -0.188 4.188 20 H 0.216 0.784 21 H 0.112 0.888 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.336 0.664 27 H 0.032 0.968 28 H 0.010 0.990 29 H 0.250 0.750 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 -3.523 -5.656 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.172 4.172 3 C -0.033 4.033 4 C -0.025 4.025 5 H 0.070 0.930 6 C -0.228 4.228 7 N -0.296 5.296 8 C 0.001 3.999 9 C 0.023 3.977 10 C -0.505 4.505 11 H 0.062 0.938 12 C -0.163 4.163 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.199 1.199 18 C -0.214 4.214 19 C -0.225 4.225 20 H 0.233 0.767 21 H 0.130 0.870 22 H 0.112 0.888 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.154 0.846 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.581 -3.465 -5.871 10.196 hybrid contribution -0.637 0.031 0.509 0.816 sum 6.944 -3.434 -5.362 9.421 Atomic orbital electron populations 1.25193 0.96859 1.01999 1.02933 1.23592 0.95545 0.99400 0.98672 1.18935 0.83451 0.98989 1.01922 1.21541 0.94330 0.96877 0.89716 0.93008 1.22404 0.94773 1.02167 1.03410 1.60152 1.55634 1.12511 1.01345 1.21090 0.94685 0.88986 0.95165 1.19068 0.95248 0.94877 0.88548 1.20303 0.91076 0.99884 1.39255 0.93816 1.25334 1.00064 0.96110 0.94776 1.70102 1.18403 1.27345 1.38579 0.85993 0.80263 0.80289 0.77624 1.20871 1.21603 1.19869 1.22476 1.00103 0.93652 1.05120 1.23047 0.94234 1.03879 1.01375 0.76744 0.87035 0.88803 0.90195 0.93371 0.91124 0.84563 0.94929 0.97223 0.94055 0.91155 0.92586 0.89176 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.91 19.25 74.32 1.43 -8.48 16 2 C -0.17 -6.48 13.06 31.12 0.41 -6.07 16 3 C 0.00 0.11 5.39 28.79 0.16 0.27 16 4 C 0.09 2.70 2.56 44.92 0.11 2.82 16 5 H 0.05 1.86 7.72 -2.39 -0.02 1.84 16 6 C -0.17 -3.88 9.16 71.98 0.66 -3.22 16 7 N -0.67 -26.43 5.22 -491.59 -2.57 -28.99 16 8 C 0.13 5.78 5.59 86.30 0.48 6.26 16 9 C 0.02 1.13 1.65 -52.90 -0.09 1.04 16 10 C -0.47 -25.60 8.10 25.60 0.21 -25.40 16 11 H 0.04 2.44 7.83 -2.91 -0.02 2.41 16 12 C 0.04 2.06 5.41 84.65 0.46 2.51 16 13 N -0.91 -53.20 13.20 21.45 0.28 -52.92 16 14 Si 0.93 45.44 29.55 68.60 2.03 47.47 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 16 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 17 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 18 C -0.18 -8.25 9.79 30.60 0.30 -7.95 16 19 C -0.19 -7.86 9.88 30.62 0.30 -7.55 16 20 H 0.22 7.46 7.80 -4.41 -0.03 7.43 16 21 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 22 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.18 7.54 -2.38 -0.02 1.16 16 25 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 26 H 0.34 12.37 8.52 -89.68 -0.76 11.61 16 27 H 0.03 1.67 7.94 -2.39 -0.02 1.65 16 28 H 0.01 0.39 7.35 -2.39 -0.02 0.37 16 29 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.06 2.85 8.14 -2.38 -0.02 2.83 16 32 H 0.09 3.23 8.08 -2.39 -0.02 3.21 16 33 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -63.32 287.23 4.47 -58.85 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.30 Total: 21.36 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 4.43 Total: -45.76 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.28 Total: -81.91 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -63.32 4.47 -58.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228940407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.858 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds