Wall clock time and date at job start Mon Mar 30 2020 20:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29506 * 1 3 3 Si 1.86804 * 119.99992 * 2 1 4 4 H 1.48498 * 109.47041 * 274.84072 * 3 2 1 5 5 H 1.48495 * 109.46981 * 34.84401 * 3 2 1 6 6 H 1.48497 * 109.46963 * 154.83899 * 3 2 1 7 7 C 1.46519 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99877 * 164.07442 * 7 2 1 9 9 C 1.40355 * 120.00245 * 344.07279 * 7 2 1 10 10 C 1.41333 * 120.25471 * 335.85348 * 9 7 2 11 11 C 1.36487 * 119.96805 * 179.97438 * 10 9 7 12 12 C 1.38662 * 120.49884 * 359.97438 * 11 10 9 13 13 C 1.39499 * 120.51488 * 359.72823 * 12 11 10 14 14 N 1.39675 * 119.98820 * 180.27921 * 13 12 11 15 15 C 1.38170 * 120.01612 * 0.55124 * 13 12 11 16 16 N 1.48023 * 120.24331 * 179.72692 * 15 13 12 17 17 O 1.31703 * 119.99783 * 269.72653 * 16 15 13 18 18 O 1.31700 * 120.00034 * 89.44582 * 16 15 13 19 19 H 0.97004 * 120.00052 * 0.02562 * 1 2 3 20 20 H 1.08004 * 120.01764 * 359.95550 * 10 9 7 21 21 H 1.08001 * 119.75151 * 179.97438 * 11 10 9 22 22 H 1.07995 * 119.74511 * 180.02562 * 12 11 10 23 23 H 0.97000 * 119.99556 * 180.27191 * 14 13 12 24 24 H 0.96998 * 120.00208 * 0.27038 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 2.3743 2.1055 -1.3951 5 1 1.4815 2.6209 0.7999 6 1 3.5740 1.4128 0.5953 7 6 2.0276 -1.2689 0.0006 8 1 3.0766 -1.2870 -0.2561 9 6 1.3663 -2.4609 0.3346 10 6 0.2032 -2.4293 1.1370 11 6 -0.4355 -3.5920 1.4579 12 6 0.0474 -4.8092 1.0019 13 6 1.1901 -4.8638 0.2037 14 7 1.6636 -6.0954 -0.2543 15 6 1.8568 -3.7003 -0.1293 16 7 3.0733 -3.7529 -0.9710 17 8 4.2584 -3.8716 -0.4088 18 8 2.9702 -3.6865 -2.2823 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1798 -1.4855 1.4962 21 1 -1.3238 -3.5637 2.0715 22 1 -0.4679 -5.7217 1.2629 23 1 2.4604 -6.1338 -0.8061 24 1 1.1956 -6.9123 -0.0206 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238621064.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:41 Heat of formation + Delta-G solvation = 12.833574 kcal Electronic energy + Delta-G solvation = -13262.787372 eV Core-core repulsion = 10757.987720 eV Total energy + Delta-G solvation = -2504.799652 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 208.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63726 -38.86127 -36.51457 -35.29381 -34.80068 -32.49992 -30.02197 -27.73728 -26.48839 -23.07117 -22.52550 -19.84002 -19.14952 -19.05134 -18.13194 -17.32504 -16.74905 -16.26775 -15.37096 -14.85532 -14.72058 -14.16275 -13.68428 -13.29054 -13.04176 -12.53347 -12.43815 -12.27737 -12.02973 -11.75882 -11.69318 -11.62082 -11.11600 -9.96105 -9.08760 -8.69635 -6.78866 -1.09100 0.53792 0.61958 0.90684 1.28576 1.39694 1.45357 2.05722 2.37290 2.81093 3.26668 4.19049 4.37684 4.54530 4.69327 4.84502 4.97580 5.05328 5.40518 5.58437 5.78443 5.79958 5.90678 6.10249 6.32775 6.35599 6.64162 6.81356 7.83256 Molecular weight = 208.06amu Principal moments of inertia in cm(-1) A = 0.032294 B = 0.013404 C = 0.010182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.819882 B = 2088.350578 C = 2749.384683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.047 3.953 3 Si 0.992 3.008 4 H -0.257 1.257 5 H -0.239 1.239 6 H -0.263 1.263 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.142 3.858 10 C -0.225 4.225 11 C -0.032 4.032 12 C -0.312 4.312 13 C 0.284 3.716 14 N -0.872 5.872 15 C -0.244 4.244 16 N 0.024 4.976 17 O -0.200 6.200 18 O -0.199 6.199 19 H 0.313 0.687 20 H 0.126 0.874 21 H 0.141 0.859 22 H 0.144 0.856 23 H 0.388 0.612 24 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -1.374 2.652 3.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.180 4.180 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.162 1.162 6 H -0.187 1.187 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.137 3.863 10 C -0.246 4.246 11 C -0.050 4.050 12 C -0.336 4.336 13 C 0.177 3.823 14 N -0.413 5.413 15 C -0.331 4.331 16 N 0.515 4.485 17 O -0.402 6.402 18 O -0.402 6.402 19 H 0.127 0.873 20 H 0.144 0.856 21 H 0.158 0.842 22 H 0.162 0.838 23 H 0.215 0.785 24 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.399 -1.189 3.083 4.740 hybrid contribution 1.071 0.186 -0.686 1.285 sum -2.328 -1.003 2.396 3.489 Atomic orbital electron populations 1.69059 1.09743 1.33406 1.24900 1.28242 0.95529 1.04384 0.89895 0.85065 0.79325 0.74349 0.80366 1.18121 1.16176 1.18673 1.21044 0.96765 0.92255 1.40944 0.91999 1.17267 0.92160 0.88595 0.88250 1.20925 0.99252 0.98965 1.05423 1.20744 0.97499 0.91427 0.95376 1.20202 1.00876 0.99276 1.13283 1.17152 0.91550 0.82693 0.90856 1.42357 1.33415 1.05581 1.59906 1.20068 0.95673 0.97680 1.19640 1.50506 1.04324 0.91402 1.02302 1.96120 1.13283 1.54851 1.75966 1.96131 1.95531 1.55389 0.93114 0.87321 0.85631 0.84157 0.83832 0.78549 0.75260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -34.48 10.96 23.21 0.25 -34.22 14 2 C 0.05 2.21 5.34 87.20 0.47 2.68 14 3 Si 0.99 35.32 29.67 68.60 2.04 37.36 14 4 H -0.26 -8.94 7.11 99.48 0.71 -8.23 14 5 H -0.24 -7.39 7.11 99.48 0.71 -6.68 14 6 H -0.26 -9.77 7.11 99.48 0.71 -9.07 14 7 C -0.49 -26.41 8.98 24.95 0.22 -26.18 14 8 H 0.06 3.54 7.63 -2.91 -0.02 3.52 14 9 C 0.14 7.65 5.61 -21.29 -0.12 7.53 14 10 C -0.22 -10.83 8.72 22.62 0.20 -10.64 14 11 C -0.03 -1.28 9.96 21.96 0.22 -1.06 14 12 C -0.31 -12.26 9.91 22.68 0.22 -12.04 14 13 C 0.28 12.50 6.75 38.18 0.26 12.76 14 14 N -0.87 -30.80 9.08 -51.46 -0.47 -31.26 14 15 C -0.24 -12.71 6.33 37.07 0.23 -12.47 14 16 N 0.02 1.27 3.20 -44.81 -0.14 1.13 14 17 O -0.20 -10.47 19.97 3.51 0.07 -10.40 14 18 O -0.20 -10.63 19.97 3.51 0.07 -10.56 14 19 H 0.31 12.23 8.27 -92.71 -0.77 11.47 14 20 H 0.13 6.04 6.09 -2.91 -0.02 6.03 14 21 H 0.14 4.55 8.06 -2.91 -0.02 4.53 14 22 H 0.14 4.49 8.06 -2.91 -0.02 4.46 14 23 H 0.39 14.14 8.07 -92.71 -0.75 13.39 14 24 H 0.42 11.13 8.84 -92.71 -0.82 10.31 14 Total: -1.00 -60.89 230.78 3.22 -57.67 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.30 Total: 29.73 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 1.70 Total: -39.43 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.36 Total: -64.36 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.14 Total: -20.96 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.04 Total: 37.36 kcal Total: -60.89 3.22 -57.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621064.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.503 kcal (2) G-P(sol) polarization free energy of solvation -60.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds