Wall clock time and date at job start Mon Mar 30 2020 20:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32177 * 118.80267 * 2 1 4 4 C 1.32132 * 121.44923 * 180.02562 * 3 2 1 5 5 C 1.39861 * 119.05222 * 359.71966 * 4 3 2 6 6 C 1.47390 * 121.06784 * 180.30445 * 5 4 3 7 7 O 1.21517 * 119.99944 * 174.08484 * 6 5 4 8 8 O 1.34779 * 120.00010 * 354.08055 * 6 5 4 9 9 C 1.42153 * 117.86908 * 0.56182 * 5 4 3 10 10 C 1.41235 * 120.75623 * 179.71306 * 9 5 4 11 11 H 1.08000 * 120.00033 * 333.94455 * 10 9 5 12 12 C 1.40334 * 120.00013 * 153.93739 * 10 9 5 13 13 N 1.30552 * 120.00046 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99826 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47249 * 60.00119 * 14 12 10 16 16 H 1.48504 * 109.47249 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47206 * 300.00239 * 14 12 10 18 18 N 1.31343 * 118.79678 * 180.02562 * 2 1 3 19 19 H 1.09005 * 109.46803 * 269.97508 * 1 2 3 20 20 H 1.09004 * 109.46863 * 29.97157 * 1 2 3 21 21 H 1.08994 * 109.47465 * 149.97580 * 1 2 3 22 22 H 1.08006 * 120.47072 * 180.02562 * 4 3 2 23 23 H 0.96700 * 117.00612 * 180.02562 * 8 6 5 24 24 H 0.96999 * 119.99694 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1438 1.1582 0.0000 4 6 3.4637 1.2193 -0.0005 5 6 4.1986 0.0293 0.0049 6 6 5.6724 0.0456 0.0113 7 8 6.2910 -0.9942 0.1244 8 8 6.3340 1.2137 -0.1084 9 6 3.4786 -1.1964 -0.0015 10 6 4.1593 -2.4339 -0.0026 11 1 5.1574 -2.5008 -0.4098 12 6 3.5389 -3.5765 0.5255 13 7 2.3323 -3.4956 1.0174 14 14 4.4395 -5.2130 0.5246 15 1 5.6924 -5.0889 1.3119 16 1 3.5734 -6.2550 1.1326 17 1 4.7683 -5.5963 -0.8719 18 7 2.1397 -1.1510 -0.0005 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8903 -0.5134 21 1 -0.3634 -0.8897 -0.5142 22 1 3.9678 2.1744 -0.0001 23 1 7.3001 1.1741 -0.0993 24 1 1.9033 -4.2855 1.3820 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259916924.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:30:08 Heat of formation + Delta-G solvation = -59.664351 kcal Electronic energy + Delta-G solvation = -13252.791641 eV Core-core repulsion = 10744.848243 eV Total energy + Delta-G solvation = -2507.943398 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 208.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.53725 -38.38472 -35.18539 -34.14728 -32.00048 -31.52453 -27.81366 -26.81169 -22.80109 -22.26109 -20.21140 -17.86768 -17.21913 -15.84339 -15.77550 -15.04957 -14.60197 -14.36079 -13.60110 -12.88203 -12.61384 -12.13286 -11.78191 -11.59342 -11.34144 -11.30094 -11.03144 -10.61256 -10.39406 -10.09153 -9.74173 -8.92031 -8.77628 -8.11045 -7.63297 -6.85524 -4.93703 1.90925 2.71565 2.98546 3.02951 3.15769 3.77448 3.80131 4.10322 4.54162 5.29046 5.49159 5.69662 6.09755 6.33279 6.37172 6.41700 6.58598 6.84240 6.88968 7.00400 7.35693 7.62362 8.10915 8.26815 8.53868 8.76979 9.02067 9.83422 9.97233 Molecular weight = 208.06amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.016102 C = 0.009893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.825440 B = 1738.457684 C = 2829.556427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.319 3.681 3 N -0.623 5.623 4 C 0.217 3.783 5 C -0.353 4.353 6 C 0.532 3.468 7 O -0.527 6.527 8 O -0.533 6.533 9 C 0.291 3.709 10 C -0.374 4.374 11 H 0.119 0.881 12 C 0.065 3.935 13 N -0.713 5.713 14 Si 0.924 3.076 15 H -0.259 1.259 16 H -0.275 1.275 17 H -0.260 1.260 18 N -0.509 5.509 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.144 0.856 23 H 0.395 0.605 24 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 1.951 -0.698 2.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.048 3.952 3 N -0.347 5.347 4 C 0.048 3.952 5 C -0.364 4.364 6 C 0.380 3.620 7 O -0.418 6.418 8 O -0.345 6.345 9 C 0.167 3.833 10 C -0.405 4.405 11 H 0.136 0.864 12 C -0.163 4.163 13 N -0.333 5.333 14 Si 0.747 3.253 15 H -0.183 1.183 16 H -0.200 1.200 17 H -0.184 1.184 18 N -0.228 5.228 19 H 0.088 0.912 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.161 0.839 23 H 0.251 0.749 24 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.126 1.438 -0.556 1.547 hybrid contribution 1.954 -0.641 0.143 2.061 sum 1.828 0.797 -0.413 2.036 Atomic orbital electron populations 1.20318 0.88403 1.02098 1.02191 1.22977 0.97105 0.85009 0.90100 1.68044 1.09406 1.30143 1.27060 1.22795 0.89773 0.96415 0.86184 1.20210 0.89173 0.97253 1.29797 1.20697 0.88716 0.79909 0.72660 1.90746 1.69546 1.33136 1.48410 1.84625 1.25395 1.37481 1.86957 1.18500 0.87165 0.91099 0.86583 1.20457 1.01836 0.90469 1.27699 0.86362 1.26381 0.94499 1.01738 0.93642 1.69855 1.11015 1.31670 1.20772 0.86093 0.80187 0.78833 0.80192 1.18278 1.19982 1.18380 1.69101 1.08826 1.26358 1.18483 0.91227 0.91457 0.90862 0.83894 0.74948 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.30 36.00 0.37 -0.99 14 2 C 0.32 7.75 7.64 -157.25 -1.20 6.55 14 3 N -0.62 -14.83 10.29 -10.47 -0.11 -14.94 14 4 C 0.22 4.99 10.90 -16.82 -0.18 4.81 14 5 C -0.35 -8.89 5.96 -104.06 -0.62 -9.51 14 6 C 0.53 12.20 8.24 34.46 0.28 12.48 14 7 O -0.53 -13.19 14.43 -19.28 -0.28 -13.46 14 8 O -0.53 -9.48 12.80 -40.71 -0.52 -10.00 14 9 C 0.29 8.06 6.42 -84.29 -0.54 7.52 14 10 C -0.37 -10.18 8.15 -37.66 -0.31 -10.49 14 11 H 0.12 3.22 5.59 -52.49 -0.29 2.93 14 12 C 0.07 1.64 5.48 -17.31 -0.09 1.55 14 13 N -0.71 -18.30 11.89 55.57 0.66 -17.64 14 14 Si 0.92 18.69 29.56 -169.99 -5.03 13.67 14 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 14 16 H -0.28 -5.26 7.11 56.52 0.40 -4.86 14 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 14 18 N -0.51 -13.80 8.43 -8.44 -0.07 -13.87 14 19 H 0.07 1.24 8.14 -51.93 -0.42 0.81 14 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 14 21 H 0.07 1.35 8.14 -51.93 -0.42 0.93 14 22 H 0.14 2.81 7.72 -52.48 -0.41 2.41 14 23 H 0.39 4.92 9.11 45.56 0.42 5.34 14 24 H 0.28 6.53 8.29 -40.82 -0.34 6.19 14 LS Contribution 226.94 15.07 3.42 3.42 Total: -1.00 -31.20 226.94 -4.90 -36.10 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -0.69 Total: 4.81 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -2.29 Total: 11.92 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.48 Total: -46.45 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.80 Total: -23.46 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -31.20 -4.90 -36.10 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259916924.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.561 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds