Wall clock time and date at job start Mon Mar 30 2020 20:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40124 * 126.48921 * 2 1 4 4 N 1.28665 * 108.93557 * 180.02562 * 3 2 1 5 5 C 1.34847 * 109.63117 * 359.72894 * 4 3 2 6 6 C 1.41498 * 126.01975 * 180.27101 * 5 4 3 7 7 H 1.07998 * 120.00096 * 188.59339 * 6 5 4 8 8 C 1.39738 * 120.00150 * 8.58801 * 6 5 4 9 9 N 1.30989 * 119.99703 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00185 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47219 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47148 * 120.00600 * 10 8 6 13 13 H 1.48506 * 109.47396 * 240.00101 * 10 8 6 14 14 C 1.35015 * 126.49609 * 180.02562 * 2 1 3 15 15 C 1.50701 * 126.76760 * 359.97438 * 14 2 1 16 16 C 1.53782 * 113.61476 * 224.25681 * 15 14 2 17 17 C 1.53776 * 87.08459 * 220.02338 * 16 15 14 18 18 C 1.53781 * 87.08231 * 25.43053 * 17 16 15 19 19 H 1.08997 * 109.47477 * 274.75817 * 1 2 3 20 20 H 1.09001 * 109.47252 * 34.76278 * 1 2 3 21 21 H 1.08998 * 109.46953 * 154.75835 * 1 2 3 22 22 H 0.97001 * 119.99917 * 180.02562 * 9 8 6 23 23 H 1.08996 * 112.85519 * 355.56450 * 15 14 2 24 24 H 1.09008 * 113.61135 * 334.57069 * 16 15 14 25 25 H 1.08994 * 113.61643 * 105.47046 * 16 15 14 26 26 H 1.09002 * 113.61137 * 270.88150 * 17 16 15 27 27 H 1.08995 * 113.69599 * 139.99001 * 17 16 15 28 28 H 1.09000 * 113.61670 * 220.02387 * 18 17 16 29 29 H 1.09003 * 113.61534 * 89.11792 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2983 1.1266 0.0000 4 7 3.5250 0.7385 -0.0005 5 6 3.5739 -0.6091 0.0051 6 6 4.7478 -1.3991 0.0118 7 1 4.6798 -2.4684 -0.1238 8 6 5.9950 -0.7958 0.1937 9 7 6.0774 0.5011 0.3585 10 14 7.5446 -1.8388 0.2032 11 1 7.1830 -3.2645 -0.0012 12 1 8.4464 -1.3956 -0.8903 13 1 8.2367 -1.6854 1.5082 14 6 2.2680 -1.0854 -0.0005 15 6 1.8341 -2.5286 -0.0006 16 6 2.6235 -3.4093 0.9823 17 6 2.6096 -4.4976 -0.1041 18 6 2.4639 -3.3611 -1.1298 19 1 -0.3634 0.0852 1.0241 20 1 -0.3634 0.8442 -0.5860 21 1 -0.3633 -0.9295 -0.4382 22 1 6.9432 0.9199 0.4845 23 1 0.7532 -2.6456 0.0775 24 1 3.6201 -3.0285 1.2062 25 1 2.0611 -3.6778 1.8765 26 1 1.7409 -5.1540 -0.0533 27 1 3.5488 -5.0442 -0.1885 28 1 1.7726 -3.5907 -1.9407 29 1 3.4168 -2.9672 -1.4834 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:28:50 Heat of formation + Delta-G solvation = 84.086225 kcal Electronic energy + Delta-G solvation = -13709.966719 eV Core-core repulsion = 11441.808570 eV Total energy + Delta-G solvation = -2268.158149 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.95916 -39.13361 -35.57289 -34.27118 -31.34215 -28.63012 -27.03730 -26.25814 -25.72408 -22.39205 -21.32152 -19.86326 -19.08672 -16.97009 -16.67880 -16.23920 -15.90651 -15.59454 -14.74729 -13.85398 -13.84277 -13.47636 -13.16552 -12.94565 -12.86605 -12.83200 -12.73396 -12.11109 -11.64557 -11.25223 -11.16290 -11.12816 -11.07714 -10.63844 -10.17389 -9.26840 -8.26659 -6.12758 1.00990 1.43816 1.45074 1.59905 2.11574 2.34462 2.37180 3.54919 3.94703 3.98927 4.04011 4.12177 4.29116 4.42240 4.49162 4.66432 4.72668 4.98920 5.04872 5.13120 5.26929 5.28691 5.35000 5.39365 5.60061 5.66267 5.94505 6.45467 6.49815 6.95160 7.14735 8.31397 8.74042 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.028062 B = 0.014969 C = 0.010273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.568150 B = 1870.109760 C = 2724.965174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.372 5.372 3 N -0.186 5.186 4 N -0.289 5.289 5 C 0.110 3.890 6 C -0.469 4.469 7 H 0.106 0.894 8 C 0.016 3.984 9 N -0.833 5.833 10 Si 0.978 3.022 11 H -0.244 1.244 12 H -0.277 1.277 13 H -0.276 1.276 14 C -0.068 4.068 15 C -0.020 4.020 16 C -0.142 4.142 17 C -0.122 4.122 18 C -0.133 4.133 19 H 0.083 0.917 20 H 0.090 0.910 21 H 0.110 0.890 22 H 0.270 0.730 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 -10.918 -0.586 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.166 5.166 3 N -0.160 5.160 4 N -0.158 5.158 5 C -0.023 4.023 6 C -0.505 4.505 7 H 0.124 0.876 8 C -0.197 4.197 9 N -0.462 5.462 10 Si 0.800 3.200 11 H -0.167 1.167 12 H -0.203 1.203 13 H -0.201 1.201 14 C -0.204 4.204 15 C -0.040 4.040 16 C -0.180 4.180 17 C -0.159 4.159 18 C -0.172 4.172 19 H 0.102 0.898 20 H 0.108 0.892 21 H 0.128 0.872 22 H 0.079 0.921 23 H 0.129 0.871 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.251 -9.082 -0.557 12.283 hybrid contribution 0.703 -0.527 0.083 0.882 sum -7.548 -9.609 -0.474 12.228 Atomic orbital electron populations 1.22080 0.73265 1.05445 1.04145 1.49988 1.08362 1.05454 1.52767 1.81348 0.96125 1.09288 1.29278 1.75007 1.09049 1.14043 1.17716 1.19566 0.93297 0.87997 1.01476 1.19100 0.88759 0.94953 1.47732 0.87622 1.26802 1.03850 0.96002 0.93030 1.70208 1.26146 1.11919 1.37973 0.85210 0.77098 0.79738 0.77959 1.16693 1.20302 1.20114 1.22323 0.90609 0.90935 1.16554 1.20886 0.99678 0.84354 0.99125 1.23099 1.01575 0.96188 0.97175 1.22735 1.02855 0.95511 0.94806 1.22974 1.01199 0.96353 0.96633 0.89816 0.89183 0.87201 0.92077 0.87069 0.90393 0.90861 0.87762 0.91315 0.90335 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.62 11.31 127.77 1.45 4.07 15 2 N -0.37 -16.64 4.03 -352.94 -1.42 -18.06 15 3 N -0.19 -10.35 13.74 37.02 0.51 -9.84 15 4 N -0.29 -18.05 10.61 -52.52 -0.56 -18.60 15 5 C 0.11 6.25 6.53 39.67 0.26 6.50 15 6 C -0.47 -25.60 7.10 23.44 0.17 -25.43 15 7 H 0.11 5.19 4.63 -2.91 -0.01 5.18 15 8 C 0.02 0.88 5.49 85.18 0.47 1.34 15 9 N -0.83 -50.22 11.96 21.80 0.26 -49.96 15 10 Si 0.98 41.06 29.56 68.60 2.03 43.09 15 11 H -0.24 -9.34 7.11 99.48 0.71 -8.63 15 12 H -0.28 -11.51 7.11 99.48 0.71 -10.81 15 13 H -0.28 -11.35 7.11 99.48 0.71 -10.64 15 14 C -0.07 -3.16 6.34 42.25 0.27 -2.89 15 15 C -0.02 -0.67 3.97 -11.01 -0.04 -0.71 15 16 C -0.14 -4.60 7.18 31.12 0.22 -4.38 15 17 C -0.12 -3.14 8.08 31.12 0.25 -2.88 15 18 C -0.13 -4.17 7.19 31.12 0.22 -3.95 15 19 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 20 H 0.09 2.35 8.14 -2.39 -0.02 2.33 15 21 H 0.11 2.37 7.11 -2.39 -0.02 2.35 15 22 H 0.27 15.02 8.30 -92.71 -0.77 14.25 15 23 H 0.11 2.95 7.11 -2.39 -0.02 2.93 15 24 H 0.08 3.13 5.27 -2.38 -0.01 3.12 15 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.10 2.00 8.14 -2.39 -0.02 1.99 15 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 15 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 29 H 0.07 2.58 6.10 -2.39 -0.01 2.56 15 Total: -1.00 -74.50 241.77 5.24 -69.26 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.16 Total: 12.45 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 3.26 Total: -28.33 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -1.21 Total: -96.47 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -74.50 5.24 -69.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.346 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds