Wall clock time and date at job start Mon Mar 30 2020 20:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31201 * 1 3 3 Si 1.86803 * 120.00369 * 2 1 4 4 H 1.48494 * 109.47335 * 270.00171 * 3 2 1 5 5 H 1.48494 * 109.46976 * 30.00200 * 3 2 1 6 6 H 1.48502 * 109.46871 * 150.00008 * 3 2 1 7 7 C 1.39293 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99958 * 359.97438 * 7 2 1 9 9 N 1.36510 * 120.00234 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00152 * 180.02562 * 9 7 2 11 11 O 1.21584 * 119.99724 * 359.97438 * 10 9 7 12 12 C 1.47861 * 119.99932 * 179.97438 * 10 9 7 13 13 C 1.36245 * 119.78679 * 179.97438 * 12 10 9 14 14 C 1.41779 * 119.10169 * 179.71999 * 13 12 10 15 15 O 1.22212 * 120.64017 * 179.97438 * 14 13 12 16 16 C 1.41332 * 118.72455 * 0.02562 * 14 13 12 17 17 C 1.35309 * 119.49426 * 359.97438 * 16 14 13 18 18 N 1.35386 * 120.88731 * 0.02562 * 17 16 14 19 19 H 0.97004 * 119.32032 * 179.97438 * 18 17 16 20 20 H 0.97006 * 119.99473 * 0.02562 * 1 2 3 21 21 H 0.97003 * 120.00401 * 359.97438 * 9 7 2 22 22 H 1.07999 * 120.44642 * 359.69901 * 13 12 10 23 23 H 1.07992 * 120.25133 * 180.02562 * 16 14 13 24 24 H 1.08003 * 119.55720 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2461 1.6177 0.0000 4 1 2.4936 2.0464 -1.4000 5 1 1.4437 2.6526 0.7001 6 1 3.5437 1.4400 0.7001 7 6 2.0085 -1.2063 -0.0005 8 1 1.4685 -2.1416 -0.0005 9 7 3.3736 -1.2064 0.0000 10 6 4.0474 -2.3736 -0.0011 11 8 3.4395 -3.4265 -0.0020 12 6 5.5261 -2.3737 -0.0011 13 6 6.2029 -3.5561 -0.0016 14 6 7.6206 -3.5392 -0.0076 15 8 8.2559 -4.5831 -0.0078 16 6 8.2849 -2.2917 -0.0124 17 6 7.5586 -1.1501 -0.0116 18 7 6.2053 -1.1874 -0.0058 19 1 5.7071 -0.3550 -0.0049 20 1 -0.4850 0.8401 -0.0004 21 1 3.8587 -0.3664 0.0004 22 1 5.6667 -4.4936 0.0029 23 1 9.3640 -2.2501 -0.0174 24 1 8.0652 -0.1963 -0.0156 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236746.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:31:08 Heat of formation + Delta-G solvation = -60.259598 kcal Electronic energy + Delta-G solvation = -12912.413427 eV Core-core repulsion = 10404.444217 eV Total energy + Delta-G solvation = -2507.969210 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 208.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.12652 -40.14875 -38.55833 -36.46905 -34.12760 -32.81568 -32.24305 -27.83243 -24.99999 -24.33649 -21.80033 -21.35843 -19.66264 -18.56682 -17.66831 -17.06507 -16.45635 -16.38129 -15.73575 -15.48815 -15.35465 -14.86331 -14.40879 -14.09118 -13.70675 -13.55292 -13.08963 -12.57513 -12.06503 -11.73780 -11.11525 -10.72986 -10.50777 -10.47635 -9.18580 -8.59507 -6.19392 -0.35289 0.39608 1.22464 1.35157 1.42405 1.68451 1.87567 2.12929 2.29065 2.75647 3.05225 3.63338 3.82956 3.96387 4.14342 4.45404 4.70242 5.10459 5.26539 5.46008 5.60017 5.74203 5.99715 6.31368 6.59439 7.02786 7.04762 7.54645 8.55555 Molecular weight = 208.06amu Principal moments of inertia in cm(-1) A = 0.052560 B = 0.008962 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.598965 B = 3123.463944 C = 3646.218728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.005 4.005 3 Si 0.960 3.040 4 H -0.247 1.247 5 H -0.270 1.270 6 H -0.216 1.216 7 C -0.341 4.341 8 H 0.064 0.936 9 N -0.543 5.543 10 C 0.461 3.539 11 O -0.604 6.604 12 C 0.162 3.838 13 C -0.253 4.253 14 C 0.375 3.625 15 O -0.595 6.595 16 C -0.315 4.315 17 C 0.189 3.811 18 N -0.566 5.566 19 H 0.433 0.567 20 H 0.289 0.711 21 H 0.390 0.610 22 H 0.123 0.877 23 H 0.170 0.830 24 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.978 11.807 0.008 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.777 3.223 4 H -0.171 1.171 5 H -0.195 1.195 6 H -0.138 1.138 7 C -0.470 4.470 8 H 0.082 0.918 9 N -0.182 5.182 10 C 0.249 3.751 11 O -0.489 6.489 12 C 0.049 3.951 13 C -0.281 4.281 14 C 0.273 3.727 15 O -0.488 6.488 16 C -0.339 4.339 17 C 0.060 3.940 18 N -0.177 5.177 19 H 0.273 0.727 20 H 0.099 0.901 21 H 0.227 0.773 22 H 0.141 0.859 23 H 0.188 0.812 24 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 13.613 10.703 0.009 17.316 hybrid contribution -0.767 0.495 0.008 0.913 sum 12.846 11.198 0.018 17.042 Atomic orbital electron populations 1.69682 1.08603 1.30477 1.45335 1.26382 0.96588 1.03236 0.94581 0.85463 0.80258 0.75754 0.80813 1.17070 1.19454 1.13835 1.19089 0.80580 0.95879 1.51454 0.91815 1.41722 1.06559 1.06625 1.63274 1.17884 0.86004 0.84562 0.86682 1.90709 1.68709 1.32507 1.56971 1.20042 0.90329 0.87543 0.97163 1.22652 0.97180 0.97309 1.10912 1.17757 0.88014 0.91035 0.75899 1.90730 1.70084 1.37487 1.50475 1.22408 1.02987 0.91645 1.16867 1.22824 0.80187 1.02642 0.88324 1.41484 1.07569 1.07461 1.61141 0.72744 0.90109 0.77276 0.85900 0.81236 0.74032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.83 13.95 21.72 0.30 -48.53 14 2 C 0.00 -0.23 5.51 85.04 0.47 0.24 14 3 Si 0.96 30.78 27.74 68.60 1.90 32.68 14 4 H -0.25 -7.35 7.11 99.48 0.71 -6.64 14 5 H -0.27 -8.82 7.11 99.48 0.71 -8.12 14 6 H -0.22 -4.96 6.52 99.48 0.65 -4.31 14 7 C -0.34 -17.99 10.16 84.22 0.86 -17.13 14 8 H 0.06 4.11 7.37 -2.91 -0.02 4.09 14 9 N -0.54 -22.45 5.07 -309.68 -1.57 -24.01 14 10 C 0.46 20.19 7.75 86.79 0.67 20.86 14 11 O -0.60 -33.53 15.85 -3.98 -0.06 -33.59 14 12 C 0.16 5.36 6.77 40.47 0.27 5.64 14 13 C -0.25 -9.71 9.55 22.68 0.22 -9.50 14 14 C 0.37 13.59 6.77 23.91 0.16 13.76 14 15 O -0.59 -26.87 17.89 -6.01 -0.11 -26.97 14 16 C -0.32 -7.12 9.99 22.35 0.22 -6.89 14 17 C 0.19 2.47 11.16 83.47 0.93 3.40 14 18 N -0.57 -10.88 5.27 -184.61 -0.97 -11.85 14 19 H 0.43 5.49 7.01 -92.70 -0.65 4.84 14 20 H 0.29 14.03 8.30 -92.70 -0.77 13.26 14 21 H 0.39 11.83 3.98 -92.71 -0.37 11.46 14 22 H 0.12 5.44 7.58 -2.91 -0.02 5.42 14 23 H 0.17 3.05 8.06 -2.91 -0.02 3.03 14 24 H 0.24 -0.28 8.06 -2.91 -0.02 -0.31 14 Total: -1.00 -82.67 224.51 3.48 -79.19 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.18 Total: 22.72 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 3.80 Total: 10.37 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -2.24 Total: -84.40 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -0.17 Total: -60.57 kcal Atomic # 14 Polarization: 30.78 SS G_CDS: 1.90 Total: 32.68 kcal Total: -82.67 3.48 -79.19 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236746.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.926 kcal (2) G-P(sol) polarization free energy of solvation -82.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds