Wall clock time and date at job start Mon Mar 30 2020 20:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86797 * 119.99874 * 2 1 4 4 H 1.48508 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46928 * 299.99323 * 3 2 1 6 6 H 1.48496 * 109.47375 * 59.99816 * 3 2 1 7 7 C 1.40124 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99577 * 180.02562 * 7 2 1 9 9 C 1.46169 * 120.00224 * 0.02562 * 7 2 1 10 10 O 1.21749 * 119.99900 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00153 * 179.97438 * 9 7 2 12 12 C 1.39554 * 120.00174 * 184.67057 * 11 9 7 13 13 C 1.39438 * 120.49672 * 325.04249 * 12 11 9 14 14 C 1.38456 * 118.37872 * 179.97438 * 13 12 11 15 15 C 1.38305 * 119.25967 * 359.76693 * 14 13 12 16 16 N 1.32003 * 120.93609 * 0.50733 * 15 14 13 17 17 O 1.41595 * 119.11176 * 179.72963 * 16 15 14 18 18 C 1.31905 * 121.77838 * 359.45474 * 16 15 14 19 19 H 0.97009 * 120.00316 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00292 * 4.67429 * 11 9 7 21 21 H 1.08002 * 120.80890 * 0.02562 * 13 12 11 22 22 H 1.08001 * 120.37175 * 179.97438 * 14 13 12 23 23 H 1.08001 * 119.52674 * 180.24366 * 15 14 13 24 24 H 1.08001 * 119.67991 * 180.26566 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8816 2.3963 -1.2126 6 1 1.8815 2.3965 1.2124 7 6 2.0069 -1.2135 0.0005 8 1 3.0869 -1.2135 0.0010 9 6 1.2761 -2.4794 0.0005 10 8 0.0586 -2.4794 -0.0004 11 7 1.9499 -3.6466 0.0005 12 6 1.2556 -4.8531 -0.0979 13 6 0.0036 -4.9998 0.4983 14 6 -0.6466 -6.2157 0.3727 15 6 -0.0411 -7.2359 -0.3381 16 7 1.1477 -7.0680 -0.8868 17 8 1.7344 -8.1405 -1.6013 18 6 1.8015 -5.9263 -0.7920 19 1 -0.4851 0.8401 -0.0004 20 1 2.9175 -3.6480 0.0690 21 1 -0.4481 -4.1846 1.0439 22 1 -1.6174 -6.3647 0.8220 23 1 -0.5462 -8.1849 -0.4421 24 1 2.7706 -5.8247 -1.2578 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641417068.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:31:10 Heat of formation + Delta-G solvation = -7.875768 kcal Electronic energy + Delta-G solvation = -12880.878862 eV Core-core repulsion = 10375.181185 eV Total energy + Delta-G solvation = -2505.697677 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 208.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.26115 -39.79416 -36.23827 -34.71997 -34.56450 -31.69670 -30.79776 -28.47271 -25.12780 -24.89976 -22.11723 -19.88041 -18.91954 -18.00462 -17.88204 -17.28752 -16.38889 -16.24564 -15.77233 -15.30242 -14.85243 -14.63388 -13.45481 -13.20765 -13.03378 -12.86024 -12.74568 -12.25198 -12.00215 -11.23432 -10.97963 -10.70943 -10.09226 -9.93717 -9.33592 -8.43166 -7.00195 -0.29030 -0.22732 1.39390 1.42502 1.52755 1.60741 2.15442 2.20247 2.44942 2.67968 3.42389 3.54962 3.61421 3.82455 3.88719 4.22372 4.76452 4.95614 5.09679 5.24594 5.64235 5.74479 5.92163 6.05390 6.08236 6.74081 7.11853 8.19257 8.49264 Molecular weight = 208.06amu Principal moments of inertia in cm(-1) A = 0.073554 B = 0.007476 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.581416 B = 3744.406647 C = 4037.813998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.034 3.966 3 Si 0.998 3.002 4 H -0.247 1.247 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.530 3.470 10 O -0.596 6.596 11 N -0.677 5.677 12 C 0.178 3.822 13 C -0.099 4.099 14 C -0.074 4.074 15 C 0.038 3.962 16 N -0.118 5.118 17 O -0.627 6.627 18 C 0.018 3.982 19 H 0.280 0.720 20 H 0.417 0.583 21 H 0.151 0.849 22 H 0.210 0.790 23 H 0.204 0.796 24 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -2.367 3.970 4.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.184 4.184 3 Si 0.817 3.183 4 H -0.170 1.170 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.591 4.591 8 H 0.115 0.885 9 C 0.338 3.662 10 O -0.481 6.481 11 N -0.321 5.321 12 C 0.076 3.924 13 C -0.128 4.128 14 C -0.093 4.093 15 C -0.110 4.110 16 N 0.202 4.798 17 O -0.679 6.679 18 C -0.132 4.132 19 H 0.090 0.910 20 H 0.254 0.746 21 H 0.169 0.831 22 H 0.227 0.773 23 H 0.220 0.780 24 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.204 -2.507 3.725 4.494 hybrid contribution 0.850 0.541 -0.251 1.038 sum 0.647 -1.966 3.474 4.044 Atomic orbital electron populations 1.70090 1.09336 1.29625 1.34240 1.26908 0.95567 1.04778 0.91159 0.84944 0.79457 0.75363 0.78518 1.16973 1.19654 1.19283 1.21409 0.95290 0.89063 1.53310 0.88509 1.18742 0.87289 0.83137 0.76986 1.90596 1.15137 1.86550 1.55852 1.43774 1.11012 1.02521 1.74835 1.18202 0.94210 0.86635 0.93332 1.22288 0.94306 0.98769 0.97390 1.22124 1.01995 0.89305 0.95837 1.23092 0.86469 1.03977 0.97438 1.42844 1.09129 1.08639 1.19180 1.97556 1.77287 1.28845 1.64198 1.22242 1.02839 0.85618 1.02483 0.90963 0.74579 0.83138 0.77334 0.77959 0.79888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.45 11.82 21.85 0.26 -43.20 14 2 C 0.03 1.65 5.50 85.33 0.47 2.12 14 3 Si 1.00 36.21 29.56 68.60 2.03 38.24 14 4 H -0.25 -8.29 7.11 99.48 0.71 -7.58 14 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 14 6 H -0.27 -9.42 7.11 99.48 0.71 -8.72 14 7 C -0.56 -27.21 9.54 24.79 0.24 -26.98 14 8 H 0.10 4.18 7.85 -2.91 -0.02 4.16 14 9 C 0.53 26.16 7.60 86.30 0.66 26.82 14 10 O -0.60 -33.41 12.49 -4.51 -0.06 -33.47 14 11 N -0.68 -25.89 5.33 -307.24 -1.64 -27.53 14 12 C 0.18 6.29 6.32 38.38 0.24 6.53 14 13 C -0.10 -3.26 8.81 22.61 0.20 -3.06 14 14 C -0.07 -1.76 10.10 22.34 0.23 -1.53 14 15 C 0.04 1.06 10.68 84.68 0.90 1.96 14 16 N -0.12 -4.41 3.58 -195.04 -0.70 -5.11 14 17 O -0.63 -30.88 20.05 -38.77 -0.78 -31.66 14 18 C 0.02 0.61 10.63 84.86 0.90 1.51 14 19 H 0.28 13.68 8.29 -92.70 -0.77 12.91 14 20 H 0.42 13.09 8.80 -92.71 -0.82 12.27 14 21 H 0.15 5.70 6.31 -2.91 -0.02 5.68 14 22 H 0.21 2.86 8.06 -2.91 -0.02 2.84 14 23 H 0.20 4.32 8.06 -2.91 -0.02 4.30 14 24 H 0.18 5.77 8.06 -2.91 -0.02 5.75 14 Total: -1.00 -76.11 228.75 3.38 -72.73 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.42 Total: 22.62 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 3.84 Total: 7.37 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -2.08 Total: -75.84 kcal Atomic # 8 Polarization: -64.29 SS G_CDS: -0.83 Total: -65.13 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -76.11 3.38 -72.73 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641417068.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.858 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds