Wall clock time and date at job start Mon Mar 30 2020 20:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35465 * 119.26542 * 2 1 4 4 C 1.35190 * 120.78907 * 179.72044 * 3 2 1 5 5 C 1.41276 * 119.32822 * 359.97438 * 4 3 2 6 6 O 1.22285 * 120.68063 * 179.97438 * 5 4 3 7 7 C 1.41801 * 118.63618 * 359.97438 * 5 4 3 8 8 O 1.36096 * 120.41069 * 179.97438 * 7 5 4 9 9 C 1.42905 * 117.00249 * 179.97438 * 8 7 5 10 10 C 1.50692 * 109.47434 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00339 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00076 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99974 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00100 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47244 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46805 * 119.99940 * 14 12 10 17 17 H 1.48497 * 109.47322 * 239.99687 * 14 12 10 18 18 C 1.35427 * 119.17430 * 359.97438 * 7 5 4 19 19 H 1.09002 * 109.46852 * 90.00383 * 1 2 3 20 20 H 1.09000 * 109.46867 * 210.00121 * 1 2 3 21 21 H 1.08993 * 109.47292 * 330.00404 * 1 2 3 22 22 H 1.08001 * 119.59944 * 359.73971 * 3 2 1 23 23 H 1.08004 * 120.33454 * 180.02562 * 4 3 2 24 24 H 1.08998 * 109.47116 * 300.00312 * 9 8 7 25 25 H 1.09000 * 109.46994 * 59.99649 * 9 8 7 26 26 H 0.97004 * 120.00066 * 180.02562 * 13 12 10 27 27 H 1.07998 * 119.69674 * 180.02562 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1272 1.1817 0.0000 4 6 3.4786 1.2177 0.0057 5 6 4.2031 0.0049 0.0122 6 8 5.4259 0.0085 0.0169 7 6 3.4832 -1.2168 0.0131 8 8 4.1446 -2.4062 0.0188 9 6 3.3471 -3.5921 0.0200 10 6 4.2457 -4.8017 0.0258 11 1 5.3185 -4.6776 0.0280 12 6 3.6982 -6.0672 0.0273 13 7 2.3918 -6.2185 0.0242 14 14 4.8121 -7.5667 0.0339 15 1 6.2312 -7.1293 0.0373 16 1 4.5420 -8.3786 1.2476 17 1 4.5485 -8.3844 -1.1774 18 6 2.1293 -1.1852 0.0083 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5137 22 1 1.5688 2.1062 -0.0043 23 1 3.9991 2.1640 0.0060 24 1 2.7152 -3.6041 0.9080 25 1 2.7207 -3.6095 -0.8719 26 1 2.0067 -7.1087 0.0256 27 1 1.5725 -2.1106 0.0094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259968310.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:30:32 Heat of formation + Delta-G solvation = -36.656621 kcal Electronic energy + Delta-G solvation = -13259.012331 eV Core-core repulsion = 10790.181055 eV Total energy + Delta-G solvation = -2468.831276 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65783 -37.74421 -36.98774 -32.92248 -32.09046 -30.32522 -27.77177 -26.44089 -23.86397 -22.48341 -21.83421 -17.74517 -17.29625 -16.25654 -16.18017 -15.58421 -15.20884 -14.50139 -14.35066 -13.90286 -13.22962 -13.15710 -12.97328 -12.51710 -12.21790 -11.67660 -11.18350 -11.07769 -10.96484 -10.31969 -10.23735 -9.27360 -8.89109 -8.85100 -8.52064 -6.93803 -6.24917 -4.26598 1.59999 1.85648 2.82557 3.25134 3.31740 3.39917 4.14453 4.22363 4.43891 4.65943 4.71695 5.06300 5.13185 5.21330 5.32165 5.45367 5.62890 6.04264 6.28083 6.56561 6.81752 7.03396 7.10815 7.24350 7.70873 7.96121 8.33313 8.69944 8.91025 9.38960 10.86851 Molecular weight = 209.08amu Principal moments of inertia in cm(-1) A = 0.044534 B = 0.007944 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.586658 B = 3523.943564 C = 4132.084318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.464 5.464 3 C 0.141 3.859 4 C -0.312 4.312 5 C 0.394 3.606 6 O -0.517 6.517 7 C 0.004 3.996 8 O -0.290 6.290 9 C 0.186 3.814 10 C -0.518 4.518 11 H 0.073 0.927 12 C 0.059 3.941 13 N -0.899 5.899 14 Si 0.913 3.087 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.025 4.025 19 H 0.073 0.927 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.158 0.842 23 H 0.147 0.853 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.266 0.734 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 12.270 0.001 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.155 5.155 3 C 0.010 3.990 4 C -0.339 4.339 5 C 0.286 3.714 6 O -0.403 6.403 7 C -0.048 4.048 8 O -0.201 6.201 9 C 0.113 3.887 10 C -0.556 4.556 11 H 0.091 0.909 12 C -0.142 4.142 13 N -0.538 5.538 14 Si 0.740 3.260 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.148 4.148 19 H 0.092 0.908 20 H 0.106 0.894 21 H 0.102 0.898 22 H 0.175 0.825 23 H 0.165 0.835 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.233 11.970 0.001 14.528 hybrid contribution -0.125 -0.957 -0.009 0.965 sum -8.357 11.013 -0.009 13.825 Atomic orbital electron populations 1.22267 0.77129 1.04739 1.03561 1.42595 1.07606 1.04105 1.61165 1.21686 0.93945 0.88632 0.94752 1.21911 0.93014 1.00145 1.18836 1.17014 0.89552 0.87008 0.77864 1.90791 1.14494 1.89705 1.45276 1.20707 0.90397 0.90639 1.03070 1.86331 1.36012 1.11398 1.86383 1.20662 0.92024 0.79651 0.96336 1.21040 0.94297 0.88851 1.51386 0.90888 1.24922 0.95486 0.99123 0.94672 1.69944 1.10123 1.23466 1.50289 0.86180 0.80759 0.81363 0.77690 1.19211 1.20690 1.20686 1.21738 0.93479 0.89400 1.10137 0.90815 0.89392 0.89789 0.82471 0.83538 0.96319 0.96319 0.92486 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.59 59.85 0.63 1.12 15 2 N -0.46 -5.83 3.01 -124.66 -0.37 -6.21 15 3 C 0.14 1.61 10.25 -17.03 -0.17 1.44 15 4 C -0.31 -4.83 10.00 -39.51 -0.39 -5.22 15 5 C 0.39 8.51 6.77 -37.07 -0.25 8.26 15 6 O -0.52 -13.30 17.72 -10.92 -0.19 -13.49 15 7 C 0.00 0.09 6.71 -39.22 -0.26 -0.17 15 8 O -0.29 -7.78 9.96 -35.62 -0.35 -8.13 15 9 C 0.19 5.05 4.50 36.00 0.16 5.21 15 10 C -0.52 -15.30 9.43 -34.44 -0.32 -15.62 15 11 H 0.07 2.19 7.81 -52.49 -0.41 1.78 15 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 13 N -0.90 -25.94 13.29 55.43 0.74 -25.20 15 14 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 15 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 18 C -0.03 -0.44 9.31 -16.77 -0.16 -0.60 15 19 H 0.07 0.46 8.14 -51.93 -0.42 0.04 15 20 H 0.09 0.65 7.99 -51.93 -0.41 0.23 15 21 H 0.08 0.37 7.99 -51.93 -0.42 -0.04 15 22 H 0.16 0.99 8.02 -52.49 -0.42 0.56 15 23 H 0.15 1.95 8.06 -52.48 -0.42 1.52 15 24 H 0.02 0.51 7.67 -51.93 -0.40 0.12 15 25 H 0.02 0.52 7.67 -51.93 -0.40 0.12 15 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 27 H 0.17 2.90 6.19 -52.49 -0.32 2.58 15 LS Contribution 245.69 15.07 3.70 3.70 Total: -1.00 -35.96 245.69 -5.13 -41.10 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -2.76 Total: -4.50 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.87 Total: -3.99 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.36 Total: -31.41 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.55 Total: -21.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -35.96 -5.13 -41.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968310.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.441 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds