Wall clock time and date at job start Mon Mar 30 2020 20:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 11 11 N 1.28635 * 122.93992 * 0.02627 * 10 9 7 12 12 C 1.47596 * 108.55170 * 180.38438 * 11 10 9 13 13 C 1.54853 * 101.89401 * 14.95236 * 12 11 10 14 14 H 1.08995 * 111.07881 * 94.77426 * 13 12 11 15 15 C 1.52994 * 111.07836 * 218.78029 * 13 12 11 16 16 C 1.53779 * 113.61398 * 277.49631 * 15 13 12 17 17 C 1.53787 * 87.08353 * 220.02196 * 16 15 13 18 18 C 1.53782 * 87.08212 * 25.43039 * 17 16 15 19 19 O 1.34596 * 122.93720 * 179.73206 * 10 9 7 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.08993 * 110.94782 * 133.10313 * 12 11 10 24 24 H 1.09002 * 110.94489 * 256.76802 * 12 11 10 25 25 H 1.09003 * 112.85506 * 48.80364 * 15 13 12 26 26 H 1.09004 * 113.61164 * 334.56521 * 16 15 13 27 27 H 1.08999 * 113.61658 * 105.47492 * 16 15 13 28 28 H 1.09004 * 113.61037 * 270.88156 * 17 16 15 29 29 H 1.08996 * 113.61609 * 139.97656 * 17 16 15 30 30 H 1.09001 * 113.61631 * 220.02775 * 18 17 16 31 31 H 1.09001 * 113.61652 * 89.11414 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0138 -2.6149 0.0010 11 7 3.2291 -3.6342 0.0000 12 6 4.0514 -4.8599 0.0096 13 6 5.4425 -4.3078 0.4070 14 1 5.6037 -4.3883 1.4820 15 6 6.5567 -5.0143 -0.3677 16 6 6.9728 -6.3626 0.2438 17 6 8.4238 -5.9761 -0.0881 18 6 7.9665 -4.5096 -0.0170 19 8 5.3228 -2.9284 -0.0039 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 3.6864 -5.5682 0.7532 24 1 4.0811 -5.3169 -0.9796 25 1 6.3636 -5.0605 -1.4394 26 1 6.7745 -6.4368 1.3131 27 1 6.6120 -7.2257 -0.3157 28 1 8.7415 -6.2866 -1.0835 29 1 9.1372 -6.2492 0.6894 30 1 8.4077 -3.8767 -0.7871 31 1 8.0397 -4.0772 0.9809 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260727708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:31:51 Heat of formation + Delta-G solvation = 3.681528 kcal Electronic energy + Delta-G solvation = -13533.459811 eV Core-core repulsion = 11202.210824 eV Total energy + Delta-G solvation = -2331.248988 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.75860 -38.41646 -33.54561 -32.62350 -31.07929 -28.54838 -25.75881 -24.83416 -22.97366 -21.77681 -19.66187 -19.24850 -16.74095 -16.31616 -16.03755 -15.31580 -14.67024 -14.17959 -13.76614 -12.89167 -12.67952 -12.57368 -12.52651 -12.34332 -11.86407 -11.69193 -11.17185 -10.84257 -10.64425 -10.53498 -10.39526 -10.34270 -9.92378 -9.53659 -8.92315 -8.58030 -8.35348 -6.00532 -4.00201 2.97653 3.31469 3.38878 3.40078 3.71431 4.44133 4.44502 4.51135 4.63809 4.76329 4.95087 5.11776 5.19237 5.30510 5.46690 5.56740 5.60339 5.67069 5.73311 5.82318 5.89076 5.99993 6.10827 6.34329 6.51080 6.74853 6.97123 7.13257 7.59930 8.48140 8.71347 9.21667 9.57032 11.12051 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.066213 B = 0.006829 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.773469 B = 4099.430869 C = 4456.633900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.870 3.130 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.100 0.900 9 C 0.052 3.948 10 C 0.322 3.678 11 N -0.525 5.525 12 C -0.008 4.008 13 C 0.054 3.946 14 H 0.084 0.916 15 C -0.104 4.104 16 C -0.130 4.130 17 C -0.143 4.143 18 C -0.131 4.131 19 O -0.351 6.351 20 H 0.264 0.736 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.518 -9.639 0.528 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.118 0.882 9 C 0.014 3.986 10 C 0.097 3.903 11 N -0.259 5.259 12 C -0.138 4.138 13 C -0.004 4.004 14 H 0.102 0.898 15 C -0.123 4.123 16 C -0.168 4.168 17 C -0.180 4.180 18 C -0.168 4.168 19 O -0.256 6.256 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.678 -9.697 0.468 17.599 hybrid contribution 1.099 0.721 0.024 1.315 sum 15.778 -8.976 0.492 18.159 Atomic orbital electron populations 1.69884 1.06109 1.26792 1.50756 1.24923 0.94787 0.98588 0.94810 0.86943 0.80460 0.84221 0.78716 1.20058 1.21095 1.18955 1.21035 0.87351 0.96015 1.50753 0.88232 1.18582 0.98477 0.82782 0.98709 1.26309 0.77987 0.98982 0.87048 1.75037 1.28903 0.96910 1.25056 1.24124 0.89915 0.97573 1.02168 1.24108 0.97104 0.80555 0.98638 0.89782 1.22620 0.93648 0.95857 1.00162 1.22886 0.96274 0.96334 1.01267 1.22833 0.96464 0.96899 1.01805 1.22861 0.95387 0.96221 1.02338 1.87010 1.27486 1.28679 1.82437 0.92600 0.93245 0.93673 0.89354 0.90181 0.88561 0.89858 0.91085 0.90189 0.91395 0.91231 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.51 -14.89 9.51 -34.44 -0.33 -15.22 16 8 H 0.10 3.19 7.01 -52.49 -0.37 2.83 16 9 C 0.05 1.29 4.67 -29.03 -0.14 1.15 16 10 C 0.32 7.33 7.67 -13.62 -0.10 7.22 16 11 N -0.52 -12.11 10.20 -56.99 -0.58 -12.69 16 12 C -0.01 -0.14 7.69 -2.46 -0.02 -0.16 16 13 C 0.05 0.84 3.44 -25.76 -0.09 0.76 16 14 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 15 C -0.10 -1.27 3.36 -89.81 -0.30 -1.58 16 16 C -0.13 -1.23 7.64 -25.92 -0.20 -1.43 16 17 C -0.14 -1.25 8.08 -25.92 -0.21 -1.46 16 18 C -0.13 -1.43 7.62 -25.91 -0.20 -1.62 16 19 O -0.35 -6.92 10.88 -15.57 -0.17 -7.09 16 20 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 21 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16 22 H 0.05 1.07 7.57 -51.93 -0.39 0.67 16 23 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 25 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 26 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 259.46 15.07 3.91 3.91 Total: -1.00 -31.54 259.46 -6.92 -38.46 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.50 Total: -1.66 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.68 Total: -10.40 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.19 Total: -39.65 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.17 Total: -7.09 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.54 -6.92 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260727708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.144 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds