Wall clock time and date at job start Mon Mar 30 2020 20:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46859 * 175.22231 * 3 2 1 5 5 C 1.52999 * 109.47004 * 174.64253 * 4 3 2 6 6 C 1.52996 * 109.82582 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47077 * 60.70034 * 6 5 4 8 8 H 1.07998 * 119.99822 * 356.37006 * 7 6 5 9 9 C 1.37877 * 119.99919 * 176.37081 * 7 6 5 10 10 N 1.31520 * 120.00137 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99881 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46862 * 60.00061 * 11 9 7 13 13 H 1.48494 * 109.46967 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47159 * 300.00223 * 11 9 7 15 15 C 1.54385 * 109.82775 * 59.10203 * 5 4 3 16 16 C 1.55566 * 102.27432 * 261.84034 * 15 5 4 17 17 C 1.54946 * 100.82615 * 325.88300 * 16 15 5 18 18 O 1.43241 * 109.83305 * 300.96801 * 5 4 3 19 19 H 1.08991 * 109.47465 * 55.22078 * 3 2 1 20 20 H 1.09001 * 109.46744 * 295.22035 * 3 2 1 21 21 H 1.09007 * 109.47032 * 54.64533 * 4 3 2 22 22 H 1.08999 * 109.47359 * 294.64677 * 4 3 2 23 23 H 1.08994 * 109.47553 * 180.70488 * 6 5 4 24 24 H 1.09004 * 109.47118 * 300.70488 * 6 5 4 25 25 H 0.97000 * 119.99941 * 179.97438 * 10 9 7 26 26 H 1.08991 * 110.84831 * 20.03266 * 15 5 4 27 27 H 1.09005 * 110.84352 * 143.45158 * 15 5 4 28 28 H 1.09002 * 111.22858 * 207.98727 * 16 15 5 29 29 H 1.08996 * 111.13119 * 83.74124 * 16 15 5 30 30 H 1.08996 * 110.31090 * 277.47609 * 17 16 15 31 31 H 1.09007 * 110.31211 * 155.40301 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4384 -0.1201 5 6 4.6414 1.4524 0.0139 6 6 5.1595 2.8871 -0.1045 7 6 4.5691 3.7271 0.9988 8 1 3.8472 3.2972 1.6773 9 6 4.9506 5.0443 1.1418 10 7 5.8294 5.5679 0.3152 11 14 4.2182 6.0856 2.5089 12 1 4.5400 5.4741 3.8233 13 1 4.7879 7.4555 2.4469 14 1 2.7442 6.1550 2.3427 15 6 5.2721 0.5744 -1.0882 16 6 5.5347 -0.7621 -0.3366 17 6 5.8791 -0.2365 1.0798 18 8 5.0231 0.8997 1.2790 19 1 2.9717 -0.5853 -0.8440 20 1 2.9715 -0.4371 0.9297 21 1 2.6775 2.0469 0.6701 22 1 2.8342 1.8442 -1.0914 23 1 6.2462 2.8891 -0.0207 24 1 4.8688 3.2999 -1.0705 25 1 6.0975 6.4946 0.4156 26 1 4.5743 0.4252 -1.9121 27 1 6.2045 1.0113 -1.4460 28 1 6.3768 -1.3005 -0.7712 29 1 4.6402 -1.3846 -0.3178 30 1 6.9254 0.0651 1.1273 31 1 5.6722 -1.0018 1.8280 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075568634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:31:25 Heat of formation + Delta-G solvation = -36.649052 kcal Electronic energy + Delta-G solvation = -13952.016666 eV Core-core repulsion = 11619.018813 eV Total energy + Delta-G solvation = -2332.997853 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.49057 -36.44946 -33.67293 -32.59905 -31.31610 -29.99087 -26.40141 -24.02818 -22.85532 -21.28293 -19.05661 -17.48705 -16.21946 -15.67243 -15.25389 -14.88940 -14.46547 -13.76384 -13.16117 -12.98494 -12.72711 -12.34038 -12.32339 -11.82957 -11.70231 -11.23862 -11.16836 -10.94208 -10.76044 -10.61642 -10.46789 -10.25549 -10.13191 -9.68337 -8.94298 -8.53186 -8.32196 -5.95484 -3.94767 2.99389 3.00988 3.38517 3.42187 3.46054 4.26624 4.42639 4.54119 4.95116 5.17264 5.32934 5.40896 5.44029 5.49419 5.59478 5.71501 5.80649 5.97384 6.08830 6.16337 6.25885 6.41844 6.47305 6.82196 6.91397 7.45149 7.68165 7.79329 7.93394 8.05686 8.46635 9.09464 9.67851 11.16196 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026285 B = 0.010679 C = 0.008557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.977555 B = 2621.315646 C = 3271.570785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.217 3.783 3 C -0.033 4.033 4 C -0.108 4.108 5 C 0.119 3.881 6 C 0.022 3.978 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.278 1.278 15 C -0.151 4.151 16 C -0.163 4.163 17 C 0.048 3.952 18 O -0.356 6.356 19 H 0.101 0.899 20 H 0.110 0.890 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.025 0.975 24 H 0.024 0.976 25 H 0.259 0.741 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 -11.857 -2.222 12.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.100 4.100 3 C -0.073 4.073 4 C -0.147 4.147 5 C 0.080 3.920 6 C -0.015 4.015 7 C -0.540 4.540 8 H 0.078 0.922 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.717 3.283 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.188 4.188 16 C -0.201 4.201 17 C -0.030 4.030 18 O -0.276 6.276 19 H 0.119 0.881 20 H 0.128 0.872 21 H 0.107 0.893 22 H 0.093 0.907 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.191 -11.607 -2.063 11.849 hybrid contribution 0.279 0.603 0.541 0.856 sum -0.912 -11.004 -1.522 11.146 Atomic orbital electron populations 1.81156 1.13307 1.09439 1.09667 1.29506 0.95538 0.92486 0.92504 1.19648 0.80810 1.01708 1.05172 1.21825 0.96274 0.92634 1.03979 1.22278 0.91947 0.96336 0.81484 1.19421 0.96985 0.87680 0.97450 1.21105 1.24176 0.95045 1.13673 0.92176 1.24987 0.95296 0.98123 0.96170 1.69944 1.32495 1.14087 1.37514 0.86701 0.79384 0.79326 0.82870 1.20244 1.21500 1.20362 1.23342 1.02023 0.94744 0.98735 1.23435 1.01881 0.97905 0.96835 1.23264 0.95276 0.88838 0.95574 1.88549 1.66466 1.43936 1.28614 0.88084 0.87174 0.89275 0.90655 0.95676 0.95775 0.93098 0.90687 0.90457 0.90855 0.90660 0.92873 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.92 18.54 42.15 0.78 -7.14 16 2 C 0.22 3.20 15.43 -20.76 -0.32 2.88 16 3 C -0.03 -0.42 4.15 -29.52 -0.12 -0.54 16 4 C -0.11 -1.78 4.08 -26.73 -0.11 -1.88 16 5 C 0.12 2.15 0.72 -89.90 -0.06 2.09 16 6 C 0.02 0.52 4.13 -27.88 -0.12 0.40 16 7 C -0.50 -13.62 8.14 -34.44 -0.28 -13.90 16 8 H 0.06 1.62 6.64 -52.49 -0.35 1.27 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C -0.15 -2.12 5.56 -24.64 -0.14 -2.26 16 16 C -0.16 -1.85 6.57 -24.34 -0.16 -2.01 16 17 C 0.05 0.67 7.77 38.18 0.30 0.97 16 18 O -0.36 -6.69 9.54 -35.23 -0.34 -7.03 16 19 H 0.10 0.99 5.97 -51.93 -0.31 0.68 16 20 H 0.11 1.31 7.43 -51.93 -0.39 0.93 16 21 H 0.09 1.70 6.62 -51.93 -0.34 1.36 16 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.07 0.90 7.33 -51.93 -0.38 0.52 16 27 H 0.08 1.16 7.85 -51.93 -0.41 0.75 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.71 6.10 -51.93 -0.32 0.39 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 259.33 15.07 3.91 3.91 Total: -1.00 -31.11 259.33 -5.21 -36.31 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.16 Total: -4.19 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.11 Total: -12.81 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 1.52 Total: -32.98 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.34 Total: -7.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.11 -5.21 -36.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075568634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.335 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds