Wall clock time and date at job start Mon Mar 30 2020 20:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46831 * 2 1 4 4 C 1.52996 * 109.47579 * 120.00161 * 2 1 3 5 5 C 1.50696 * 109.47025 * 65.00112 * 4 2 1 6 6 C 1.41380 * 126.80347 * 124.99658 * 5 4 2 7 7 C 1.35451 * 103.98649 * 179.77327 * 6 5 4 8 8 C 1.50706 * 126.77668 * 180.22754 * 7 6 5 9 9 C 1.50699 * 109.47009 * 90.00319 * 8 7 6 10 10 H 1.07993 * 120.00010 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99463 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99670 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00482 * 0.02562 * 11 9 8 14 14 H 1.48491 * 109.47032 * 89.99757 * 13 11 9 15 15 H 1.48499 * 109.47017 * 209.99925 * 13 11 9 16 16 H 1.48502 * 109.46604 * 329.99563 * 13 11 9 17 17 O 1.34041 * 106.44823 * 0.22995 * 7 6 5 18 18 N 1.20916 * 111.56681 * 359.97438 * 17 7 6 19 19 H 1.08996 * 109.47097 * 299.99234 * 1 2 3 20 20 H 1.08995 * 109.47203 * 59.99919 * 1 2 3 21 21 H 1.09000 * 109.46569 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47007 * 240.01048 * 2 1 3 23 23 H 1.08998 * 109.46765 * 180.02562 * 3 2 1 24 24 H 1.08999 * 109.47026 * 300.00443 * 3 2 1 25 25 H 1.09006 * 109.46238 * 60.00235 * 3 2 1 26 26 H 1.09006 * 109.46889 * 305.00717 * 4 2 1 27 27 H 1.08997 * 109.47170 * 185.00182 * 4 2 1 28 28 H 1.08002 * 128.00820 * 0.04548 * 6 5 4 29 29 H 1.09003 * 109.46799 * 210.00794 * 8 7 6 30 30 H 1.09005 * 109.46817 * 330.00360 * 8 7 6 31 31 H 0.96993 * 120.00434 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6415 -2.1733 1.1888 6 6 2.5002 -3.2921 1.2876 7 6 1.6669 -4.3547 1.1811 8 6 2.0518 -5.8111 1.2255 9 6 2.0041 -6.3000 2.6502 10 1 1.7229 -5.6239 3.4440 11 6 2.3186 -7.6107 2.9400 12 7 2.2766 -8.0376 4.1833 13 14 2.8044 -8.7804 1.5669 14 1 4.2756 -8.7308 1.3719 15 1 2.3991 -10.1627 1.9277 16 1 2.1244 -8.3773 0.3098 17 8 0.4325 -3.8552 1.0283 18 7 0.4386 -2.6460 1.0325 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8901 23 1 3.1300 1.4426 -0.0005 24 1 1.6765 1.9564 -0.8899 25 1 1.6766 1.9563 0.8901 26 1 1.6054 -0.2618 2.1369 27 1 3.1264 -0.6443 1.2950 28 1 3.5718 -3.2982 1.4219 29 1 1.3548 -6.3897 0.6193 30 1 3.0616 -5.9321 0.8334 31 1 2.4981 -8.9595 4.3874 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259685708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:31:00 Heat of formation + Delta-G solvation = 34.302293 kcal Electronic energy + Delta-G solvation = -13395.700913 eV Core-core repulsion = 11065.779741 eV Total energy + Delta-G solvation = -2329.921172 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.13616 -36.77390 -33.92250 -32.89880 -31.68558 -28.24956 -27.40583 -27.03593 -23.09273 -22.22574 -20.60815 -18.96532 -17.23353 -16.50730 -16.36291 -15.14556 -14.43980 -14.08859 -13.79622 -13.34872 -12.97525 -12.50309 -12.29754 -12.26238 -11.98874 -11.80256 -11.33950 -10.88158 -10.82859 -10.73582 -10.58464 -10.24707 -10.09401 -9.58411 -9.38818 -8.70810 -8.37189 -6.19229 -4.21744 2.28568 2.91760 3.21489 3.30165 3.31091 3.95765 4.30285 4.62528 4.80811 4.92344 5.11561 5.13922 5.39591 5.58492 5.66427 5.69886 5.81817 5.90404 5.93001 6.02625 6.06712 6.20058 6.33369 6.40588 6.57337 6.71655 6.79869 6.97214 7.45694 8.32154 8.83050 8.99465 9.37250 10.93299 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.070555 B = 0.006268 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.756143 B = 4465.853123 C = 4476.683168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.032 4.032 5 C 0.016 3.984 6 C -0.264 4.264 7 C 0.040 3.960 8 C 0.054 3.946 9 C -0.525 4.525 10 H 0.076 0.924 11 C 0.075 3.925 12 N -0.892 5.892 13 Si 0.878 3.122 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.262 1.262 17 O 0.083 5.917 18 N -0.383 5.383 19 H 0.050 0.950 20 H 0.046 0.954 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 12.684 -8.406 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.070 4.070 5 C -0.143 4.143 6 C -0.287 4.287 7 C -0.023 4.023 8 C 0.016 3.984 9 C -0.563 4.563 10 H 0.094 0.906 11 C -0.128 4.128 12 N -0.530 5.530 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.187 1.187 17 O 0.022 5.978 18 N -0.092 5.092 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.098 0.902 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.179 0.821 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.206 13.053 -8.430 15.540 hybrid contribution 1.188 -0.863 -0.318 1.503 sum 0.982 12.190 -8.748 15.036 Atomic orbital electron populations 1.22018 0.94724 1.03866 1.00738 1.21055 0.96690 0.95564 0.97735 1.21839 1.00824 0.95898 1.01719 1.20021 1.01084 0.87228 0.98702 1.23366 0.89724 0.97912 1.03294 1.22232 1.01756 0.90427 1.14240 1.25081 0.82643 0.99246 0.95323 1.18463 0.97379 0.82612 0.99940 1.20794 1.48254 0.96850 0.90397 0.90558 1.24927 0.94501 0.97749 0.95610 1.69878 1.47967 1.17038 1.18103 0.86807 0.79394 0.80610 0.82797 1.19887 1.20874 1.18690 1.84768 1.30560 1.15113 1.67355 1.73665 1.22047 0.91636 1.21822 0.93096 0.93449 0.90177 0.91302 0.92695 0.92728 0.92652 0.90420 0.90057 0.82053 0.93851 0.93268 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 8.94 37.16 0.33 -1.69 16 2 C -0.09 -1.11 2.91 -90.62 -0.26 -1.37 16 3 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 4 C -0.03 -0.44 5.29 -27.89 -0.15 -0.59 16 5 C 0.02 0.28 6.52 -82.10 -0.54 -0.25 16 6 C -0.26 -5.07 11.05 -39.38 -0.44 -5.50 16 7 C 0.04 0.87 6.68 -35.30 -0.24 0.64 16 8 C 0.05 1.25 4.61 -29.03 -0.13 1.12 16 9 C -0.53 -14.55 9.65 -34.44 -0.33 -14.89 16 10 H 0.08 2.34 7.98 -52.49 -0.42 1.93 16 11 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 13 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 17 O 0.08 1.79 11.20 17.17 0.19 1.98 16 18 N -0.38 -7.60 9.52 33.43 0.32 -7.28 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.08 1.24 5.57 -51.93 -0.29 0.95 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.16 2.74 8.06 -52.49 -0.42 2.31 16 29 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 30 H 0.05 1.06 7.57 -51.93 -0.39 0.67 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 263.02 15.07 3.96 3.96 Total: -1.00 -29.42 263.02 -5.38 -34.80 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.45 Total: -1.67 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -1.51 Total: -21.57 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 1.09 Total: -33.15 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.19 Total: 1.98 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.42 -5.38 -34.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259685708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.098 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds