Wall clock time and date at job start Mon Mar 30 2020 20:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35306 * 126.13102 * 2 1 4 4 C 1.50701 * 126.03906 * 359.97438 * 3 2 1 5 5 H 1.08997 * 109.47014 * 0.02562 * 4 3 2 6 6 C 1.50704 * 109.46971 * 240.00261 * 4 3 2 7 7 H 1.08007 * 119.99486 * 275.04907 * 6 4 3 8 8 C 1.37872 * 120.00344 * 95.05618 * 6 4 3 9 9 N 1.31522 * 119.99719 * 4.94469 * 8 6 4 10 10 Si 1.86796 * 120.00275 * 184.95504 * 8 6 4 11 11 H 1.48497 * 109.47207 * 59.99337 * 10 8 6 12 12 H 1.48505 * 109.47237 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46961 * 299.99523 * 10 8 6 14 14 C 1.53001 * 109.47140 * 119.99979 * 4 3 2 15 15 N 1.46900 * 109.46853 * 185.31075 * 14 4 3 16 16 C 1.39869 * 107.92376 * 179.97438 * 3 2 1 17 17 N 1.30841 * 108.20269 * 0.26731 * 16 3 2 18 18 N 1.34951 * 126.12148 * 179.97438 * 2 1 3 19 19 C 1.46502 * 126.03915 * 0.04102 * 18 2 1 20 20 H 1.08999 * 109.46701 * 90.00358 * 1 2 3 21 21 H 1.08994 * 109.47318 * 210.00220 * 1 2 3 22 22 H 1.09002 * 109.47101 * 330.00739 * 1 2 3 23 23 H 0.97000 * 119.99769 * 180.02562 * 9 8 6 24 24 H 1.08996 * 109.47510 * 305.31301 * 14 4 3 25 25 H 1.09004 * 109.46827 * 65.31596 * 14 4 3 26 26 H 1.00897 * 111.00310 * 56.04919 * 15 14 4 27 27 H 1.00907 * 110.99842 * 179.97438 * 15 14 4 28 28 H 1.07998 * 125.90078 * 179.97438 * 16 3 2 29 29 H 1.08996 * 109.46791 * 90.00065 * 19 18 2 30 30 H 1.09004 * 109.46709 * 209.99787 * 19 18 2 31 31 H 1.08992 * 109.47021 * 329.99986 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 1.8434 2.5275 -0.0005 5 1 0.7539 2.5587 -0.0005 6 6 2.3663 3.2228 -1.2311 7 1 3.3585 3.6495 -1.2296 8 6 1.5781 3.3145 -2.3586 9 7 0.3363 2.8822 -2.3297 10 14 2.2740 4.0523 -3.9272 11 1 3.4452 3.2552 -4.3721 12 1 1.2331 4.0354 -4.9864 13 1 2.6969 5.4525 -3.6704 14 6 2.3734 3.2341 1.2487 15 7 1.8205 4.5936 1.3139 16 6 3.6335 0.6558 0.0006 17 7 3.6334 -0.6526 -0.0049 18 7 2.3026 -1.0901 0.0005 19 6 1.8538 -2.4847 0.0003 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5137 23 1 -0.2181 2.9464 -3.1230 24 1 2.0735 2.6770 2.1362 25 1 3.4612 3.2862 1.2027 26 1 0.8120 4.5752 1.2924 27 1 2.1556 5.0814 2.1312 28 1 4.5084 1.2889 0.0004 29 1 1.7431 -2.8305 -1.0274 30 1 2.5894 -3.1031 0.5145 31 1 0.8950 -2.5578 0.5135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260462262.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:59 Heat of formation + Delta-G solvation = 70.583629 kcal Electronic energy + Delta-G solvation = -14031.472389 eV Core-core repulsion = 11735.417245 eV Total energy + Delta-G solvation = -2296.055144 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31146 -35.15334 -32.59309 -32.13771 -31.19479 -28.51127 -25.92954 -25.17824 -23.87069 -21.08814 -19.45353 -18.32661 -16.40465 -15.50723 -14.86797 -14.59259 -14.34937 -13.53376 -13.40658 -13.00156 -12.57442 -12.34843 -11.99721 -11.91128 -11.69382 -11.33885 -10.99143 -10.65578 -10.60635 -10.40075 -9.76646 -9.35457 -8.88663 -8.33735 -8.27796 -7.59870 -7.07956 -5.84815 -3.80464 2.77166 3.32423 3.44897 3.46877 3.51685 3.93759 4.60414 5.10284 5.46072 5.48709 5.61699 5.67727 5.69116 5.83937 5.96516 6.29643 6.39566 6.48351 6.64794 6.78185 6.90137 7.02225 7.38310 7.68523 7.91270 7.97128 8.08303 8.21317 8.40808 8.57313 8.69745 9.21049 9.78258 11.24702 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.012308 C = 0.010600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.430953 B = 2274.383159 C = 2640.979101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.056 3.944 3 C -0.168 4.168 4 C 0.099 3.901 5 H 0.065 0.935 6 C -0.469 4.469 7 H 0.051 0.949 8 C 0.064 3.936 9 N -0.897 5.897 10 Si 0.885 3.115 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.081 3.919 15 N -0.832 5.832 16 C 0.053 3.947 17 N -0.326 5.326 18 N -0.393 5.393 19 C 0.111 3.889 20 H 0.077 0.923 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.256 0.744 24 H -0.008 1.008 25 H 0.052 0.948 26 H 0.334 0.666 27 H 0.317 0.683 28 H 0.171 0.829 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -5.847 6.048 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.179 4.179 4 C 0.079 3.921 5 H 0.083 0.917 6 C -0.507 4.507 7 H 0.070 0.930 8 C -0.136 4.136 9 N -0.537 5.537 10 Si 0.714 3.286 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.203 1.203 14 C -0.050 4.050 15 N -0.359 5.359 16 C -0.132 4.132 17 N -0.148 5.148 18 N -0.179 5.179 19 C -0.031 4.031 20 H 0.096 0.904 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.066 0.934 24 H 0.010 0.990 25 H 0.071 0.929 26 H 0.146 0.854 27 H 0.127 0.873 28 H 0.188 0.812 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.088 -6.944 5.227 8.692 hybrid contribution -0.495 0.663 -0.264 0.869 sum -0.407 -6.281 4.963 8.015 Atomic orbital electron populations 1.20204 0.88150 1.01487 1.03062 1.20763 0.94158 0.86904 1.05009 1.20683 0.91177 0.97483 1.08595 1.17396 0.98182 0.84642 0.91856 0.91690 1.20780 1.00552 1.33295 0.96107 0.93029 1.24853 0.94767 0.95424 0.98529 1.69884 1.06523 1.48504 1.28741 0.86769 0.78544 0.79767 0.83508 1.20686 1.21742 1.20325 1.21863 0.98673 0.87718 0.96753 1.58512 1.13212 1.18604 1.45586 1.23576 0.98513 0.91271 0.99848 1.77108 0.96816 1.13539 1.27289 1.48157 1.04094 1.05048 1.60608 1.21543 1.00053 0.79377 1.02170 0.90437 0.93498 0.90101 0.93436 0.99030 0.92942 0.85367 0.87306 0.81224 0.92023 0.90442 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 9.75 36.01 0.35 -0.93 16 2 C 0.06 1.18 6.93 -82.26 -0.57 0.61 16 3 C -0.17 -3.88 4.79 -105.06 -0.50 -4.38 16 4 C 0.10 2.39 2.37 -92.92 -0.22 2.17 16 5 H 0.07 1.69 5.89 -51.93 -0.31 1.38 16 6 C -0.47 -12.72 7.89 -34.44 -0.27 -12.99 16 7 H 0.05 1.43 7.82 -52.48 -0.41 1.02 16 8 C 0.06 1.79 5.45 -17.82 -0.10 1.70 16 9 N -0.90 -25.32 12.77 55.43 0.71 -24.61 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.08 1.69 6.02 -3.82 -0.02 1.67 16 15 N -0.83 -16.27 9.35 -10.37 -0.10 -16.37 16 16 C 0.05 1.18 11.63 -17.36 -0.20 0.97 16 17 N -0.33 -7.07 12.58 30.62 0.39 -6.68 16 18 N -0.39 -7.78 4.01 -63.89 -0.26 -8.04 16 19 C 0.11 1.55 11.27 59.85 0.67 2.23 16 20 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 21 H 0.05 0.67 7.08 -51.93 -0.37 0.31 16 22 H 0.08 1.50 7.14 -51.93 -0.37 1.13 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H -0.01 -0.17 8.14 -51.93 -0.42 -0.59 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.33 6.38 8.99 -39.29 -0.35 6.03 16 27 H 0.32 5.12 9.08 -39.29 -0.36 4.77 16 28 H 0.17 3.44 8.06 -52.49 -0.42 3.02 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.88 7.05 -51.93 -0.37 0.52 16 LS Contribution 265.81 15.07 4.01 4.01 Total: -1.00 -31.27 265.81 -5.34 -36.61 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.20 Total: 7.03 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.86 Total: -8.96 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.74 Total: -55.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.27 -5.34 -36.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462262.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.198 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds