Wall clock time and date at job start Mon Mar 30 2020 20:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35306 * 126.13102 * 2 1 4 4 C 1.50701 * 126.03906 * 359.97438 * 3 2 1 5 5 H 1.08997 * 109.47014 * 0.02562 * 4 3 2 6 6 C 1.50704 * 109.46971 * 240.00261 * 4 3 2 7 7 H 1.08007 * 119.99486 * 275.04907 * 6 4 3 8 8 C 1.37872 * 120.00344 * 95.05618 * 6 4 3 9 9 N 1.31522 * 119.99719 * 4.94469 * 8 6 4 10 10 Si 1.86796 * 120.00275 * 184.95504 * 8 6 4 11 11 H 1.48497 * 109.47207 * 59.99337 * 10 8 6 12 12 H 1.48505 * 109.47237 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.46961 * 299.99523 * 10 8 6 14 14 C 1.53001 * 109.47140 * 119.99979 * 4 3 2 15 15 N 1.46900 * 109.46853 * 185.31075 * 14 4 3 16 16 C 1.39869 * 107.92376 * 179.97438 * 3 2 1 17 17 N 1.30841 * 108.20269 * 0.26731 * 16 3 2 18 18 N 1.34951 * 126.12148 * 179.97438 * 2 1 3 19 19 C 1.46502 * 126.03915 * 0.04102 * 18 2 1 20 20 H 1.08999 * 109.46701 * 90.00358 * 1 2 3 21 21 H 1.08994 * 109.47318 * 210.00220 * 1 2 3 22 22 H 1.09002 * 109.47101 * 330.00739 * 1 2 3 23 23 H 0.97000 * 119.99769 * 180.02562 * 9 8 6 24 24 H 1.08996 * 109.47510 * 305.31301 * 14 4 3 25 25 H 1.09004 * 109.46827 * 65.31596 * 14 4 3 26 26 H 1.00897 * 111.00310 * 56.04919 * 15 14 4 27 27 H 1.00907 * 110.99842 * 179.97438 * 15 14 4 28 28 H 1.07998 * 125.90078 * 179.97438 * 16 3 2 29 29 H 1.08996 * 109.46791 * 90.00065 * 19 18 2 30 30 H 1.09004 * 109.46709 * 209.99787 * 19 18 2 31 31 H 1.08992 * 109.47021 * 329.99986 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 1.8434 2.5275 -0.0005 5 1 0.7539 2.5587 -0.0005 6 6 2.3663 3.2228 -1.2311 7 1 3.3585 3.6495 -1.2296 8 6 1.5781 3.3145 -2.3586 9 7 0.3363 2.8822 -2.3297 10 14 2.2740 4.0523 -3.9272 11 1 3.4452 3.2552 -4.3721 12 1 1.2331 4.0354 -4.9864 13 1 2.6969 5.4525 -3.6704 14 6 2.3734 3.2341 1.2487 15 7 1.8205 4.5936 1.3139 16 6 3.6335 0.6558 0.0006 17 7 3.6334 -0.6526 -0.0049 18 7 2.3026 -1.0901 0.0005 19 6 1.8538 -2.4847 0.0003 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5137 23 1 -0.2181 2.9464 -3.1230 24 1 2.0735 2.6770 2.1362 25 1 3.4612 3.2862 1.2027 26 1 0.8120 4.5752 1.2924 27 1 2.1556 5.0814 2.1312 28 1 4.5084 1.2889 0.0004 29 1 1.7431 -2.8305 -1.0274 30 1 2.5894 -3.1031 0.5145 31 1 0.8950 -2.5578 0.5135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462262.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:29:58 Heat of formation + Delta-G solvation = 48.313449 kcal Electronic energy + Delta-G solvation = -14032.438096 eV Core-core repulsion = 11735.417245 eV Total energy + Delta-G solvation = -2297.020851 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.92000 -36.90749 -34.07029 -34.06622 -32.82073 -30.17172 -27.37981 -26.89162 -25.69181 -22.80088 -21.08090 -19.97702 -18.36655 -17.08630 -16.53653 -16.26690 -16.06144 -15.20995 -14.93730 -14.67408 -14.00231 -13.85995 -13.76230 -13.36301 -13.16317 -12.90700 -12.75109 -12.57777 -12.34985 -12.34051 -11.52305 -11.23642 -10.83033 -10.36910 -9.89580 -9.17559 -8.77289 -7.92838 -5.92864 1.15280 1.45381 1.45962 1.52114 1.92142 2.21344 2.56284 3.39327 3.87727 4.10025 4.15091 4.39086 4.45217 4.52624 4.68085 4.70716 4.79733 4.86434 5.14753 5.18850 5.23900 5.30398 5.69787 5.86496 5.98064 6.13656 6.40760 6.55375 6.67908 6.97742 7.02751 7.14231 7.66561 9.14049 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.012308 C = 0.010600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.430953 B = 2274.383159 C = 2640.979101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.054 3.946 3 C -0.203 4.203 4 C 0.105 3.895 5 H 0.042 0.958 6 C -0.474 4.474 7 H 0.038 0.962 8 C 0.020 3.980 9 N -0.916 5.916 10 Si 0.933 3.067 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.089 3.911 15 N -0.842 5.842 16 C 0.039 3.961 17 N -0.339 5.339 18 N -0.388 5.388 19 C 0.098 3.902 20 H 0.063 0.937 21 H 0.089 0.911 22 H 0.071 0.929 23 H 0.254 0.746 24 H 0.004 0.996 25 H 0.049 0.951 26 H 0.337 0.663 27 H 0.337 0.663 28 H 0.177 0.823 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 -6.855 6.524 9.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.214 4.214 4 C 0.085 3.915 5 H 0.061 0.939 6 C -0.513 4.513 7 H 0.057 0.943 8 C -0.178 4.178 9 N -0.557 5.557 10 Si 0.761 3.239 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.201 1.201 14 C -0.042 4.042 15 N -0.372 5.372 16 C -0.145 4.145 17 N -0.162 5.162 18 N -0.174 5.174 19 C -0.043 4.043 20 H 0.082 0.918 21 H 0.108 0.892 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.194 0.806 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.149 -7.962 5.716 9.802 hybrid contribution -0.419 0.901 -0.361 1.057 sum -0.568 -7.060 5.355 8.879 Atomic orbital electron populations 1.20194 0.86196 1.03201 1.02599 1.21158 0.95465 0.87038 1.03528 1.20679 0.92113 0.97527 1.11124 1.17224 0.96641 0.85655 0.91961 0.93942 1.21013 0.99820 1.32993 0.97450 0.94326 1.25407 0.95241 0.96382 1.00724 1.69977 1.07066 1.49671 1.28980 0.86019 0.77780 0.79083 0.81043 1.21045 1.21461 1.20095 1.21669 0.98307 0.88276 0.95913 1.58437 1.13499 1.18105 1.47132 1.23701 0.98607 0.91717 1.00487 1.77037 0.98266 1.13213 1.27651 1.48570 1.03204 1.06803 1.58807 1.22025 1.02037 0.76485 1.03716 0.91827 0.89199 0.90988 0.93733 0.97754 0.93273 0.85107 0.85037 0.80620 0.90866 0.88719 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.19 9.75 71.24 0.69 -1.50 16 2 C 0.05 2.21 6.93 41.40 0.29 2.50 16 3 C -0.20 -9.31 4.79 -20.15 -0.10 -9.40 16 4 C 0.11 5.08 2.37 -12.28 -0.03 5.05 16 5 H 0.04 2.23 5.89 -2.39 -0.01 2.21 16 6 C -0.47 -25.86 7.89 25.60 0.20 -25.66 16 7 H 0.04 2.16 7.82 -2.91 -0.02 2.13 16 8 C 0.02 1.12 5.45 84.65 0.46 1.58 16 9 N -0.92 -51.98 12.77 21.45 0.27 -51.70 16 10 Si 0.93 45.34 29.54 68.60 2.03 47.36 16 11 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 C 0.09 3.70 6.02 86.30 0.52 4.22 16 15 N -0.84 -32.29 9.35 -186.72 -1.75 -34.03 16 16 C 0.04 1.72 11.63 85.24 0.99 2.71 16 17 N -0.34 -14.31 12.58 -57.02 -0.72 -15.03 16 18 N -0.39 -14.54 4.01 -356.04 -1.43 -15.96 16 19 C 0.10 2.39 11.27 127.77 1.44 3.83 16 20 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 21 H 0.09 2.26 7.08 -2.39 -0.02 2.24 16 22 H 0.07 2.61 7.14 -2.39 -0.02 2.59 16 23 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 24 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.34 12.67 8.99 -89.70 -0.81 11.86 16 27 H 0.34 10.44 9.08 -89.69 -0.81 9.63 16 28 H 0.18 7.19 8.06 -2.91 -0.02 7.16 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.11 1.98 7.05 -2.39 -0.02 1.97 16 Total: -1.00 -65.91 265.81 2.40 -63.51 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.48 Total: 22.51 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 4.47 Total: -16.66 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -3.62 Total: -116.72 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -65.91 2.40 -63.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462262.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.824 kcal (2) G-P(sol) polarization free energy of solvation -65.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds