Wall clock time and date at job start Mon Mar 30 2020 20:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89476 * 2 1 4 4 N 1.40083 * 108.20198 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03812 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92726 * 359.97438 * 4 3 2 7 7 C 1.35320 * 107.74569 * 0.02562 * 6 4 3 8 8 C 1.50697 * 126.04023 * 180.02562 * 7 6 4 9 9 H 1.08994 * 109.47327 * 144.97078 * 8 7 6 10 10 N 1.46905 * 109.46903 * 24.97222 * 8 7 6 11 11 C 1.53002 * 109.46980 * 264.97418 * 8 7 6 12 12 C 1.50702 * 109.46854 * 185.00099 * 11 8 7 13 13 H 1.08000 * 120.00153 * 359.97438 * 12 11 8 14 14 C 1.37878 * 119.99808 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99945 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99996 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47120 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47137 * 119.99821 * 16 14 12 19 19 H 1.48502 * 109.47309 * 240.00092 * 16 14 12 20 20 H 1.09006 * 109.47315 * 89.97776 * 1 2 3 21 21 H 1.08994 * 109.47486 * 209.97447 * 1 2 3 22 22 H 1.09006 * 109.47537 * 329.97908 * 1 2 3 23 23 H 1.09005 * 109.46927 * 90.02517 * 5 4 3 24 24 H 1.08994 * 109.47314 * 210.02353 * 5 4 3 25 25 H 1.08998 * 109.46715 * 330.02835 * 5 4 3 26 26 H 1.07996 * 126.12664 * 179.97438 * 6 4 3 27 27 H 1.00900 * 111.00199 * 299.99492 * 10 8 7 28 28 H 1.00895 * 110.99933 * 63.95539 * 10 8 7 29 29 H 1.08998 * 109.47073 * 304.99995 * 11 8 7 30 30 H 1.09001 * 109.47025 * 64.99831 * 11 8 7 31 31 H 0.96999 * 120.00021 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0013 6 6 3.6142 -0.7153 -0.0004 7 6 2.3271 -1.1330 -0.0002 8 6 1.8599 -2.5657 0.0006 9 1 0.9472 -2.6500 0.5904 10 7 2.9018 -3.4201 0.5859 11 6 1.5818 -3.0122 -1.4362 12 6 0.9987 -4.4018 -1.4263 13 1 0.8426 -4.9153 -0.4891 14 6 0.6646 -5.0177 -2.6138 15 7 0.8552 -4.3925 -3.7552 16 14 -0.0574 -6.7404 -2.6017 17 1 -0.1701 -7.2200 -1.2009 18 1 -1.4046 -6.7169 -3.2262 19 1 0.8277 -7.6535 -3.3685 20 1 -0.3634 0.0004 -1.0277 21 1 -0.3634 -0.8901 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 5.0836 1.7156 1.0262 24 1 5.6089 0.9985 -0.5158 25 1 4.5558 2.4335 -0.5148 26 1 4.4891 -1.3484 -0.0011 27 1 3.7586 -3.3596 0.0566 28 1 3.0581 -3.1872 1.5551 29 1 0.8744 -2.3247 -1.8998 30 1 2.5127 -3.0128 -2.0031 31 1 0.6198 -4.8256 -4.5906 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260478503.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:30:43 Heat of formation + Delta-G solvation = 67.033351 kcal Electronic energy + Delta-G solvation = -13637.848124 eV Core-core repulsion = 11341.639029 eV Total energy + Delta-G solvation = -2296.209095 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.90725 -35.54671 -33.40108 -32.31706 -29.62577 -28.80625 -28.07186 -25.42063 -23.68592 -21.26418 -19.63744 -18.88458 -16.67431 -15.91719 -15.29654 -14.96746 -14.32334 -13.97998 -13.68777 -13.26477 -12.80333 -12.70535 -12.05641 -11.96345 -11.84107 -11.68036 -11.05008 -10.71899 -10.49972 -10.38760 -10.13953 -9.55861 -8.96456 -8.84587 -8.22726 -7.86822 -7.73946 -5.83909 -3.82165 2.19819 2.79378 3.19655 3.41662 3.48898 3.55084 4.60487 4.68592 5.08119 5.14425 5.27356 5.37249 5.43497 5.55388 5.65963 5.93346 6.04315 6.15458 6.31107 6.40813 6.60597 6.98255 7.09300 7.35550 7.67713 7.83196 8.03066 8.12762 8.20840 8.28745 8.63332 9.25027 9.79503 11.27865 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046293 B = 0.007664 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.697485 B = 3652.520385 C = 3788.921376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.082 3.918 3 N -0.308 5.308 4 N -0.386 5.386 5 C 0.108 3.892 6 C 0.038 3.962 7 C -0.240 4.240 8 C 0.168 3.832 9 H 0.075 0.925 10 N -0.823 5.823 11 C 0.039 3.961 12 C -0.490 4.490 13 H 0.062 0.938 14 C 0.049 3.951 15 N -0.904 5.904 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.287 1.287 20 H 0.079 0.921 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.164 0.836 27 H 0.330 0.670 28 H 0.320 0.680 29 H 0.019 0.981 30 H 0.012 0.988 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 9.166 7.977 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 N -0.131 5.131 4 N -0.169 5.169 5 C -0.034 4.034 6 C -0.106 4.106 7 C -0.253 4.253 8 C 0.056 3.944 9 H 0.093 0.907 10 N -0.349 5.349 11 C 0.002 3.998 12 C -0.529 4.529 13 H 0.080 0.920 14 C -0.150 4.150 15 N -0.545 5.545 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.214 1.214 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.182 0.818 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.505 9.874 7.634 13.641 hybrid contribution 0.438 -0.835 -0.123 0.951 sum 5.943 9.039 7.511 13.170 Atomic orbital electron populations 1.20173 0.86764 1.02690 1.03345 1.22239 0.96910 0.90321 0.98962 1.77173 0.86431 1.23001 1.26533 1.48207 1.05238 1.04594 1.58848 1.21708 0.84091 0.94974 1.02614 1.22090 0.99215 0.84656 1.04632 1.21549 0.91745 0.99427 1.12571 1.20128 0.93283 0.81253 0.99770 0.90745 1.58842 1.12154 1.59077 1.04819 1.19091 0.96691 0.96131 0.87912 1.21255 1.39120 1.00020 0.92502 0.91955 1.25029 0.96515 0.97713 0.95779 1.69993 1.49637 1.37562 0.97284 0.86559 0.78530 0.85096 0.77921 1.19732 1.21413 1.21392 0.90214 0.90093 0.91704 0.91433 0.89904 0.89762 0.81831 0.85770 0.86967 0.96263 0.97014 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.26 36.00 0.37 -0.75 16 2 C 0.08 1.52 7.22 -82.41 -0.59 0.93 16 3 N -0.31 -5.61 12.58 33.67 0.42 -5.19 16 4 N -0.39 -6.05 4.01 -68.16 -0.27 -6.32 16 5 C 0.11 1.10 11.47 59.85 0.69 1.79 16 6 C 0.04 0.62 10.73 -17.22 -0.18 0.44 16 7 C -0.24 -4.49 5.21 -105.05 -0.55 -5.03 16 8 C 0.17 3.47 2.94 -68.86 -0.20 3.26 16 9 H 0.07 1.56 7.41 -51.93 -0.38 1.18 16 10 N -0.82 -15.19 8.70 -5.65 -0.05 -15.24 16 11 C 0.04 1.01 4.60 -27.88 -0.13 0.89 16 12 C -0.49 -13.91 8.84 -34.44 -0.30 -14.22 16 13 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 14 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 15 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 16 Si 0.89 22.22 29.54 -169.99 -5.02 17.19 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 21 H 0.08 1.23 7.37 -51.93 -0.38 0.85 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.16 2.18 7.36 -52.49 -0.39 1.80 16 27 H 0.33 5.75 7.97 -39.29 -0.31 5.44 16 28 H 0.32 4.99 9.06 -39.29 -0.36 4.64 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 268.38 15.07 4.04 4.04 Total: -1.00 -33.63 268.38 -5.47 -39.10 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.32 Total: 4.70 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.00 Total: -11.38 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.84 Total: -53.66 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.63 -5.47 -39.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478503.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.131 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds