Wall clock time and date at job start Mon Mar 30 2020 20:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89476 * 2 1 4 4 N 1.40083 * 108.20198 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03812 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92726 * 359.97438 * 4 3 2 7 7 C 1.35320 * 107.74569 * 0.02562 * 6 4 3 8 8 C 1.50697 * 126.04023 * 180.02562 * 7 6 4 9 9 H 1.08994 * 109.47327 * 144.97078 * 8 7 6 10 10 N 1.46905 * 109.46903 * 24.97222 * 8 7 6 11 11 C 1.53002 * 109.46980 * 264.97418 * 8 7 6 12 12 C 1.50702 * 109.46854 * 185.00099 * 11 8 7 13 13 H 1.08000 * 120.00153 * 359.97438 * 12 11 8 14 14 C 1.37878 * 119.99808 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99945 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99996 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47120 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47137 * 119.99821 * 16 14 12 19 19 H 1.48502 * 109.47309 * 240.00092 * 16 14 12 20 20 H 1.09006 * 109.47315 * 89.97776 * 1 2 3 21 21 H 1.08994 * 109.47486 * 209.97447 * 1 2 3 22 22 H 1.09006 * 109.47537 * 329.97908 * 1 2 3 23 23 H 1.09005 * 109.46927 * 90.02517 * 5 4 3 24 24 H 1.08994 * 109.47314 * 210.02353 * 5 4 3 25 25 H 1.08998 * 109.46715 * 330.02835 * 5 4 3 26 26 H 1.07996 * 126.12664 * 179.97438 * 6 4 3 27 27 H 1.00900 * 111.00199 * 299.99492 * 10 8 7 28 28 H 1.00895 * 110.99933 * 63.95539 * 10 8 7 29 29 H 1.08998 * 109.47073 * 304.99995 * 11 8 7 30 30 H 1.09001 * 109.47025 * 64.99831 * 11 8 7 31 31 H 0.96999 * 120.00021 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0013 6 6 3.6142 -0.7153 -0.0004 7 6 2.3271 -1.1330 -0.0002 8 6 1.8599 -2.5657 0.0006 9 1 0.9472 -2.6500 0.5904 10 7 2.9018 -3.4201 0.5859 11 6 1.5818 -3.0122 -1.4362 12 6 0.9987 -4.4018 -1.4263 13 1 0.8426 -4.9153 -0.4891 14 6 0.6646 -5.0177 -2.6138 15 7 0.8552 -4.3925 -3.7552 16 14 -0.0574 -6.7404 -2.6017 17 1 -0.1701 -7.2200 -1.2009 18 1 -1.4046 -6.7169 -3.2262 19 1 0.8277 -7.6535 -3.3685 20 1 -0.3634 0.0004 -1.0277 21 1 -0.3634 -0.8901 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 5.0836 1.7156 1.0262 24 1 5.6089 0.9985 -0.5158 25 1 4.5558 2.4335 -0.5148 26 1 4.4891 -1.3484 -0.0011 27 1 3.7586 -3.3596 0.0566 28 1 3.0581 -3.1872 1.5551 29 1 0.8744 -2.3247 -1.8998 30 1 2.5127 -3.0128 -2.0031 31 1 0.6198 -4.8256 -4.5906 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260478503.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:30:40 Heat of formation + Delta-G solvation = 42.487176 kcal Electronic energy + Delta-G solvation = -13638.912526 eV Core-core repulsion = 11341.639029 eV Total energy + Delta-G solvation = -2297.273497 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.21036 -37.18069 -34.75497 -34.31505 -30.83658 -30.23085 -29.90197 -26.81449 -25.39551 -22.91721 -21.02046 -20.32446 -18.47880 -17.49970 -16.81415 -16.32021 -16.24721 -15.36902 -15.07137 -14.38683 -14.31740 -14.06092 -13.83529 -13.29552 -13.13295 -12.98449 -12.90024 -12.62825 -12.39787 -12.06325 -11.71635 -11.49148 -11.11664 -10.46958 -10.12994 -9.37030 -9.12880 -8.06292 -6.12402 0.91568 1.45423 1.46010 1.59859 1.69982 1.79844 2.51633 3.26708 3.60245 3.89646 4.04603 4.22501 4.41206 4.43651 4.53863 4.63777 4.65608 4.80287 4.97149 5.04000 5.13384 5.22612 5.57797 5.74128 5.78535 5.93747 6.17924 6.37911 6.59341 6.77698 6.92871 7.03276 7.54253 9.05585 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.046293 B = 0.007664 C = 0.007388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.697485 B = 3652.520385 C = 3788.921376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.063 3.937 3 N -0.330 5.330 4 N -0.381 5.381 5 C 0.095 3.905 6 C 0.053 3.947 7 C -0.274 4.274 8 C 0.188 3.812 9 H 0.066 0.934 10 N -0.828 5.828 11 C 0.050 3.950 12 C -0.501 4.501 13 H 0.062 0.938 14 C -0.008 4.008 15 N -0.942 5.942 16 Si 0.960 3.040 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.195 0.805 27 H 0.337 0.663 28 H 0.340 0.660 29 H -0.012 1.012 30 H -0.016 1.016 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 8.964 9.056 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 N -0.155 5.155 4 N -0.163 5.163 5 C -0.044 4.044 6 C -0.093 4.093 7 C -0.287 4.287 8 C 0.075 3.925 9 H 0.084 0.916 10 N -0.357 5.357 11 C 0.013 3.987 12 C -0.539 4.539 13 H 0.080 0.920 14 C -0.204 4.204 15 N -0.584 5.584 16 Si 0.786 3.214 17 H -0.187 1.187 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.088 0.912 21 H 0.100 0.900 22 H 0.103 0.897 23 H 0.109 0.891 24 H 0.128 0.872 25 H 0.108 0.892 26 H 0.212 0.788 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.006 0.994 30 H 0.002 0.998 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.540 9.701 8.741 14.604 hybrid contribution 0.222 -0.695 -0.452 0.858 sum 6.762 9.006 8.288 13.983 Atomic orbital electron populations 1.20193 0.85923 1.03733 1.02982 1.22568 0.97947 0.90456 0.99240 1.77112 0.87758 1.23239 1.27387 1.48663 1.05673 1.05079 1.56902 1.22177 0.82783 0.94787 1.04677 1.22492 0.99295 0.85331 1.02213 1.21382 0.93170 0.98359 1.15816 1.19555 0.93922 0.82912 0.96124 0.91594 1.58696 1.12043 1.58797 1.06133 1.18888 0.94194 0.94672 0.90990 1.21584 1.38838 1.01071 0.92443 0.92022 1.25913 0.97010 1.02004 0.95423 1.70129 1.50858 1.39464 0.97961 0.85461 0.77706 0.79892 0.78312 1.18704 1.20877 1.20950 0.91209 0.90046 0.89652 0.89131 0.87172 0.89208 0.78820 0.85008 0.84749 0.99377 0.99801 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.24 10.26 71.23 0.73 -1.51 16 2 C 0.06 2.34 7.22 43.10 0.31 2.65 16 3 N -0.33 -11.74 12.58 -47.39 -0.60 -12.34 16 4 N -0.38 -11.14 4.01 -369.56 -1.48 -12.62 16 5 C 0.10 1.64 11.47 127.77 1.47 3.11 16 6 C 0.05 1.62 10.73 83.54 0.90 2.52 16 7 C -0.27 -10.13 5.21 -20.14 -0.11 -10.23 16 8 C 0.19 7.75 2.94 44.17 0.13 7.88 16 9 H 0.07 2.80 7.41 -2.39 -0.02 2.78 16 10 N -0.83 -29.56 8.70 -171.80 -1.49 -31.05 16 11 C 0.05 2.66 4.60 29.85 0.14 2.80 16 12 C -0.50 -28.70 8.84 25.60 0.23 -28.48 16 13 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 14 C -0.01 -0.46 5.46 84.65 0.46 0.01 16 15 N -0.94 -58.58 13.29 21.45 0.28 -58.30 16 16 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 17 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 21 H 0.08 2.53 7.37 -2.39 -0.02 2.52 16 22 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 23 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.19 4.56 7.36 -2.91 -0.02 4.54 16 27 H 0.34 11.22 7.97 -89.69 -0.72 10.51 16 28 H 0.34 9.93 9.06 -89.70 -0.81 9.12 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -72.57 268.38 2.60 -69.97 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.39 Total: 17.91 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 4.25 Total: -21.26 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -3.29 Total: -114.31 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -72.57 2.60 -69.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478503.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.461 kcal (2) G-P(sol) polarization free energy of solvation -72.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds