Wall clock time and date at job start Mon Mar 30 2020 20:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47059 * 59.99975 * 9 7 5 11 11 H 1.48496 * 109.47534 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47329 * 300.00055 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.40799 * 119.99893 * 84.72041 * 13 3 2 15 15 C 1.40222 * 126.06887 * 0.03288 * 14 13 3 16 16 N 1.30864 * 108.36265 * 179.97438 * 15 14 13 17 17 N 1.40073 * 108.35989 * 359.97438 * 16 15 14 18 18 H 0.97003 * 126.07023 * 180.02562 * 17 16 15 19 19 C 1.35704 * 126.06495 * 179.71378 * 14 13 3 20 20 C 1.50709 * 126.22389 * 0.02562 * 19 14 13 21 21 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 22 22 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 23 23 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 25 25 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 26 26 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 27 27 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 28 28 H 1.07993 * 125.81541 * 359.95623 * 15 14 13 29 29 H 1.08998 * 109.46817 * 89.99705 * 20 19 14 30 30 H 1.09000 * 109.47091 * 209.99829 * 20 19 14 31 31 H 1.09000 * 109.46731 * 329.99432 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5005 2.2798 1.3809 11 1 6.3978 0.2165 2.6503 12 1 6.5967 0.1451 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.3786 2.6846 -1.3741 15 6 -0.6139 2.7172 -0.3841 16 7 -1.6553 3.3470 -0.8649 17 7 -1.3660 3.7397 -2.1780 18 1 -1.9591 4.2248 -2.7729 19 6 -0.1043 3.3248 -2.4689 20 6 0.6243 3.5349 -3.7713 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8292 -0.0605 2.9502 27 1 2.2720 2.1231 -1.9978 28 1 -0.5327 2.2943 0.6063 29 1 0.4240 2.6969 -4.4389 30 1 0.2802 4.4593 -4.2351 31 1 1.6957 3.6004 -3.5818 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260830378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:20 Heat of formation + Delta-G solvation = 67.277695 kcal Electronic energy + Delta-G solvation = -13947.933594 eV Core-core repulsion = 11651.735094 eV Total energy + Delta-G solvation = -2296.198500 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.48860 -35.96860 -32.64785 -32.04004 -30.70134 -29.10266 -26.91293 -25.25232 -22.80152 -21.64312 -19.70278 -18.89066 -16.63039 -16.55881 -14.84512 -14.62617 -14.46864 -13.98286 -13.50410 -12.82579 -12.61953 -12.36815 -12.24862 -11.64691 -11.53919 -11.20729 -10.85834 -10.82089 -10.24895 -10.20839 -10.06469 -9.65085 -9.25817 -8.90590 -8.69780 -8.36957 -6.11576 -6.03238 -4.14787 2.44570 3.28555 3.33620 3.35271 3.45501 3.67015 4.34680 4.86335 5.23964 5.32140 5.45683 5.67092 5.81056 6.10131 6.21337 6.31550 6.42494 6.51356 6.61355 6.98734 7.07038 7.15098 7.37221 7.62703 7.76353 7.92210 7.96042 8.19222 8.27560 8.59209 8.90335 9.14744 9.52545 10.97674 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.042947 B = 0.009010 C = 0.008086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.805006 B = 3106.747301 C = 3461.744668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.286 3.714 4 H 0.031 0.969 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.728 5.728 14 C 0.102 3.898 15 C 0.017 3.983 16 N -0.289 5.289 17 N -0.488 5.488 18 H 0.430 0.570 19 C -0.050 4.050 20 C -0.067 4.067 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.027 0.973 24 H 0.032 0.968 25 H 0.096 0.904 26 H 0.263 0.737 27 H 0.385 0.615 28 H 0.182 0.818 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 3.390 -7.780 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.183 3.817 4 H 0.049 0.951 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.360 5.360 14 C -0.009 4.009 15 C -0.172 4.172 16 N -0.113 5.113 17 N -0.204 5.204 18 H 0.272 0.728 19 C -0.179 4.179 20 C -0.126 4.126 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.218 0.782 28 H 0.199 0.801 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.873 3.583 -7.112 9.895 hybrid contribution 1.734 -0.141 -0.545 1.823 sum -4.139 3.441 -7.657 9.360 Atomic orbital electron populations 1.22084 0.99272 0.98995 1.00249 1.22031 0.91988 1.00950 1.02194 1.18496 0.93903 0.88275 0.80992 0.95084 1.21220 0.91165 1.38148 1.05873 0.92330 1.24865 0.98368 0.94978 0.95523 1.69858 1.35078 1.38120 1.09416 0.86563 0.85264 0.78241 0.77340 1.20285 1.21221 1.20276 1.44679 1.10820 1.62937 1.17581 1.17701 0.89818 1.00530 0.92892 1.23775 0.90981 1.01727 1.00758 1.77038 1.23558 1.18509 0.92171 1.45628 1.12474 1.50261 1.12052 0.72796 1.20033 0.89042 1.10473 0.98362 1.20048 0.99636 1.00993 0.91876 0.93846 0.93420 0.95356 0.94902 0.88590 0.92658 0.78183 0.80146 0.91926 0.92384 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.29 37.16 0.31 -2.74 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.29 6.93 2.23 -69.08 -0.15 6.78 16 4 H 0.03 0.83 7.18 -51.93 -0.37 0.46 16 5 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.33 11.29 55.43 0.63 -23.70 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.73 -15.21 5.24 -53.45 -0.28 -15.49 16 14 C 0.10 1.98 5.62 -83.90 -0.47 1.51 16 15 C 0.02 0.33 8.82 -17.22 -0.15 0.18 16 16 N -0.29 -5.36 12.69 30.70 0.39 -4.97 16 17 N -0.49 -7.65 7.41 33.72 0.25 -7.40 16 18 H 0.43 5.10 8.96 -182.62 -1.64 3.46 16 19 C -0.05 -0.83 7.26 -81.66 -0.59 -1.42 16 20 C -0.07 -0.84 10.24 36.01 0.37 -0.47 16 21 H 0.04 0.87 6.53 -51.93 -0.34 0.53 16 22 H 0.05 0.97 5.36 -51.92 -0.28 0.69 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.10 2.49 5.95 -51.93 -0.31 2.18 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.39 7.58 7.93 -40.82 -0.32 7.26 16 28 H 0.18 3.58 5.48 -52.49 -0.29 3.29 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.94 7.61 -51.93 -0.40 0.54 16 LS Contribution 253.04 15.07 3.81 3.81 Total: -1.00 -28.35 253.04 -6.63 -34.98 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.17 Total: 9.03 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -1.23 Total: -11.88 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.99 Total: -51.56 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.35 -6.63 -34.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.258 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds