Wall clock time and date at job start Mon Mar 30 2020 20:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47166 * 2 1 4 4 N 1.46496 * 109.47241 * 120.00409 * 2 1 3 5 5 C 1.46497 * 120.00221 * 299.99605 * 4 2 1 6 6 C 1.50697 * 109.47224 * 270.00332 * 5 4 2 7 7 H 1.08002 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99990 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00400 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99966 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47211 * 59.99852 * 10 8 6 12 12 H 1.48503 * 109.47200 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46813 * 299.99715 * 10 8 6 14 14 C 1.40805 * 119.99779 * 119.99803 * 4 2 1 15 15 C 1.40220 * 126.06614 * 359.97438 * 14 4 2 16 16 N 1.30868 * 108.36040 * 179.71893 * 15 14 4 17 17 N 1.40078 * 108.35981 * 0.44351 * 16 15 14 18 18 H 0.97001 * 126.07404 * 179.82260 * 17 16 15 19 19 C 1.35707 * 126.06616 * 179.97438 * 14 4 2 20 20 H 1.09001 * 109.46726 * 300.00069 * 1 2 3 21 21 H 1.08997 * 109.47250 * 59.99060 * 1 2 3 22 22 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46467 * 240.00412 * 2 1 3 24 24 H 1.09002 * 109.46591 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47113 * 300.00438 * 3 2 1 26 26 H 1.09000 * 109.46637 * 60.00513 * 3 2 1 27 27 H 1.09007 * 109.46888 * 30.00078 * 5 4 2 28 28 H 1.08994 * 109.47377 * 149.99830 * 5 4 2 29 29 H 0.96998 * 120.00517 * 180.02562 * 9 8 6 30 30 H 1.07991 * 125.82002 * 0.02562 * 15 14 4 31 31 H 1.08003 * 126.22206 * 0.03789 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6646 -0.1903 2.5267 6 6 2.7033 0.8016 2.9829 7 1 3.5433 1.0356 2.3456 8 6 2.5819 1.4097 4.2143 9 7 1.5594 1.1245 4.9907 10 14 3.8699 2.6387 4.7802 11 1 3.9254 3.7733 3.8237 12 1 3.5112 3.1461 6.1290 13 1 5.1967 1.9741 4.8375 14 6 2.8278 -1.8355 1.0667 15 6 3.2419 -2.4219 -0.1378 16 7 3.9848 -3.4618 0.1440 17 7 4.0638 -3.5831 1.5373 18 1 4.5483 -4.2678 2.0245 19 6 3.3457 -2.5671 2.0857 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8932 -0.5138 -0.8901 24 1 3.1301 1.4424 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 0.6905 0.2973 2.4844 28 1 1.6239 -1.0228 3.2290 29 1 1.4737 1.5526 5.8569 30 1 2.9944 -2.0720 -1.1290 31 1 3.2113 -2.3771 3.1404 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260884060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:26 Heat of formation + Delta-G solvation = 57.649720 kcal Electronic energy + Delta-G solvation = -14002.388504 eV Core-core repulsion = 11705.772504 eV Total energy + Delta-G solvation = -2296.616000 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.75462 -38.24090 -34.80566 -32.93717 -32.04585 -29.92642 -27.97537 -27.66165 -24.89576 -22.51727 -21.77404 -20.11002 -18.84808 -18.40413 -16.60304 -16.28465 -15.60226 -15.43670 -15.03122 -14.52356 -14.45549 -13.93035 -13.57621 -13.19909 -13.06920 -12.74450 -12.68326 -12.39631 -12.22017 -11.91473 -11.75435 -11.48962 -11.21762 -10.54953 -10.51336 -10.30311 -8.22502 -7.48109 -6.20642 1.10659 1.41372 1.41489 1.49460 2.12809 2.23332 2.44151 2.91336 3.18602 4.03218 4.23568 4.31462 4.47234 4.60843 4.82348 4.86359 4.93611 5.07284 5.14962 5.19889 5.28493 5.35128 5.54727 5.61805 5.68948 5.81325 6.27432 6.63222 6.63482 6.88311 7.11322 7.20237 7.51381 8.95125 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027046 B = 0.011508 C = 0.009373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.041141 B = 2432.485443 C = 2986.446100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 C -0.149 4.149 4 N -0.618 5.618 5 C 0.283 3.717 6 C -0.520 4.520 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.930 5.930 10 Si 0.949 3.051 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.064 3.936 15 C 0.003 3.997 16 N -0.299 5.299 17 N -0.470 5.470 18 H 0.449 0.551 19 C -0.041 4.041 20 H 0.036 0.964 21 H 0.084 0.916 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.009 0.991 28 H -0.001 1.001 29 H 0.263 0.737 30 H 0.200 0.800 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -3.918 -8.531 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 C -0.208 4.208 4 N -0.334 5.334 5 C 0.161 3.839 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.187 4.187 9 N -0.571 5.571 10 Si 0.775 3.225 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.201 1.201 14 C -0.044 4.044 15 C -0.186 4.186 16 N -0.124 5.124 17 N -0.187 5.187 18 H 0.295 0.705 19 C -0.190 4.190 20 H 0.055 0.945 21 H 0.103 0.897 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.027 0.973 28 H 0.017 0.983 29 H 0.071 0.929 30 H 0.217 0.783 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.596 -4.680 -8.833 10.122 hybrid contribution 0.286 1.165 1.581 1.984 sum 1.882 -3.515 -7.252 8.275 Atomic orbital electron populations 1.22123 0.95689 1.01526 1.01891 1.20833 0.93747 0.92634 0.87604 1.22103 1.00193 0.96995 1.01481 1.46284 1.54780 1.26917 1.05445 1.18484 0.94017 0.92263 0.79164 1.21856 1.08983 1.23750 1.01345 0.93249 1.25663 0.97406 0.98742 0.96864 1.70027 1.31097 1.44815 1.11113 0.85753 0.79720 0.79688 0.77329 1.19774 1.21031 1.20120 1.18139 1.00513 0.92684 0.93015 1.23777 1.00416 0.95370 0.98993 1.76937 1.21988 1.20800 0.92648 1.45778 1.43577 1.25430 1.03938 0.70492 1.21829 1.03943 0.94362 0.98880 0.94528 0.89725 0.92982 0.89020 0.94377 0.90487 0.94075 0.97289 0.98342 0.92856 0.78310 0.82000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.17 71.98 0.66 -4.06 16 2 C 0.16 5.25 3.30 44.99 0.15 5.40 16 3 C -0.15 -5.16 8.47 71.98 0.61 -4.55 16 4 N -0.62 -25.56 2.55 -678.26 -1.73 -27.29 16 5 C 0.28 14.17 4.61 85.63 0.40 14.57 16 6 C -0.52 -28.03 7.83 25.60 0.20 -27.83 16 7 H 0.05 2.71 7.63 -2.91 -0.02 2.69 16 8 C 0.01 0.63 5.46 84.65 0.46 1.09 16 9 N -0.93 -53.74 13.29 21.45 0.28 -53.45 16 10 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.06 2.51 6.70 37.59 0.25 2.76 16 15 C 0.00 0.09 11.19 85.32 0.95 1.05 16 16 N -0.30 -10.05 12.69 -56.78 -0.72 -10.77 16 17 N -0.47 -14.92 7.41 -56.75 -0.42 -15.34 16 18 H 0.45 10.77 8.96 -213.33 -1.91 8.86 16 19 C -0.04 -1.56 11.15 83.47 0.93 -0.63 16 20 H 0.04 1.31 6.66 -2.39 -0.02 1.29 16 21 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.09 2.58 6.13 -2.39 -0.01 2.56 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.04 1.69 6.92 -2.39 -0.02 1.68 16 27 H 0.01 0.49 6.43 -2.38 -0.02 0.48 16 28 H 0.00 -0.08 6.88 -2.39 -0.02 -0.09 16 29 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.20 5.28 6.87 -2.91 -0.02 5.26 16 31 H 0.16 6.46 7.26 -2.91 -0.02 6.43 16 Total: -1.00 -62.27 259.31 3.27 -59.00 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.78 Total: 14.35 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.61 Total: -12.20 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -2.59 Total: -106.85 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.27 3.27 -59.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260884060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.645 kcal (2) G-P(sol) polarization free energy of solvation -62.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds