Wall clock time and date at job start Mon Mar 30 2020 20:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47056 * 2 1 4 4 C 1.50701 * 109.46958 * 239.99942 * 2 1 3 5 5 H 1.07998 * 120.00099 * 240.00531 * 4 2 1 6 6 C 1.37880 * 119.99755 * 60.00311 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47008 * 60.00170 * 8 6 4 10 10 H 1.48496 * 109.46873 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47134 * 299.99873 * 8 6 4 12 12 N 1.46906 * 109.47053 * 120.00330 * 2 1 3 13 13 C 1.46904 * 110.99841 * 59.29926 * 12 2 1 14 14 C 1.53240 * 109.33739 * 172.74962 * 13 12 2 15 15 N 1.47085 * 108.52154 * 53.82625 * 14 13 12 16 16 C 1.35496 * 120.87637 * 128.83991 * 15 14 13 17 17 N 6.50585 * 86.08246 * 118.86706 * 2 1 3 18 18 C 1.47075 * 118.23896 * 308.81668 * 15 14 13 19 19 C 1.46896 * 110.99895 * 295.00006 * 12 2 1 20 20 H 1.09004 * 109.47006 * 299.99884 * 1 2 3 21 21 H 1.09002 * 109.47097 * 59.99865 * 1 2 3 22 22 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.49336 * 292.70649 * 13 12 2 25 25 H 1.08991 * 109.49364 * 52.78839 * 13 12 2 26 26 H 1.09007 * 109.62526 * 294.11763 * 14 13 12 27 27 H 1.08996 * 109.63001 * 173.53778 * 14 13 12 28 28 H 1.09004 * 109.62535 * 291.47568 * 18 15 14 29 29 H 1.08998 * 109.62753 * 170.89763 * 18 15 14 30 30 H 1.08999 * 109.49203 * 307.21161 * 19 12 2 31 31 H 1.08998 * 109.49713 * 67.26346 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4191 -5.2204 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 1.5350 -2.0787 1.2417 14 6 2.2093 -2.8169 2.4030 15 7 1.9932 -2.0445 3.6360 16 6 1.4995 -2.6369 4.7500 17 7 1.0855 -3.1336 5.6841 18 6 2.3277 -0.6124 3.6276 19 6 1.6487 0.0390 2.4181 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7088 1.1614 -3.4843 24 1 0.4547 -2.0820 1.3869 25 1 1.7778 -2.5777 0.3036 26 1 3.2783 -2.9056 2.2091 27 1 1.7703 -3.8087 2.5106 28 1 3.4081 -0.4892 3.5514 29 1 1.9670 -0.1468 4.5447 30 1 1.9740 1.0758 2.3330 31 1 0.5668 0.0066 2.5466 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261014131.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:54 Heat of formation + Delta-G solvation = 50.778000 kcal Electronic energy + Delta-G solvation = -13942.899964 eV Core-core repulsion = 11645.985983 eV Total energy + Delta-G solvation = -2296.913980 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.98769 -36.44356 -34.53669 -32.45752 -30.93021 -29.14312 -25.71360 -25.29422 -23.38376 -21.48339 -19.73654 -17.81965 -16.28965 -15.32410 -15.20722 -14.77561 -14.38944 -14.04770 -13.63841 -13.15006 -12.80423 -12.35919 -12.24050 -11.93678 -11.56634 -11.24010 -11.20038 -10.91522 -10.78632 -10.63330 -10.41377 -10.05315 -9.85628 -8.97487 -8.45302 -8.22403 -7.28173 -6.07521 -4.12280 2.68962 3.00388 3.28484 3.33723 3.35715 3.40560 4.35048 4.73923 5.06256 5.24235 5.34412 5.44111 5.57826 5.69637 5.77150 5.99780 6.22061 6.37425 6.48057 6.53285 6.69382 6.79085 7.00845 7.04502 7.38067 7.62567 7.73422 8.00547 8.27201 8.42301 8.48174 8.92750 9.53335 10.99399 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056097 B = 0.007992 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.013373 B = 3502.607919 C = 3741.557678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.042 0.958 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.137 3.863 15 N -0.578 5.578 16 C 0.422 3.578 17 N -0.474 5.474 18 C 0.142 3.858 19 C 0.036 3.964 20 H 0.008 0.992 21 H 0.088 0.912 22 H 0.029 0.971 23 H 0.261 0.739 24 H 0.032 0.968 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -2.495 6.604 7.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.106 3.894 3 H 0.060 0.940 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.253 5.253 13 C -0.084 4.084 14 C 0.015 3.985 15 N -0.304 5.304 16 C 0.020 3.980 17 N -0.172 5.172 18 C 0.019 3.981 19 C -0.094 4.094 20 H 0.027 0.973 21 H 0.107 0.893 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.022 -3.054 7.690 8.518 hybrid contribution -0.511 -0.085 -1.336 1.433 sum 1.512 -3.139 6.354 7.247 Atomic orbital electron populations 1.22410 1.00776 0.99346 1.00605 1.19315 0.89772 0.94624 0.85688 0.94026 1.21054 1.30942 1.12678 0.89641 0.91862 1.24925 0.95109 0.95080 0.99045 1.69867 1.36745 1.22952 1.23638 0.86583 0.79249 0.79591 0.82106 1.20344 1.21417 1.20184 1.62320 1.59446 1.01249 1.02295 1.22420 0.96654 0.91445 0.97892 1.21958 1.01445 0.93676 0.81418 1.44771 1.70034 1.09312 1.06325 1.23894 0.90561 0.94207 0.89357 1.81869 1.21109 1.06541 1.07696 1.21827 1.00535 0.77201 0.98546 1.22453 0.97745 0.98344 0.90847 0.97337 0.89317 0.95218 0.92866 0.95024 0.88128 0.90469 0.90720 0.90456 0.90726 0.89919 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 8.28 37.16 0.31 -3.61 16 2 C 0.21 4.90 2.35 -68.86 -0.16 4.73 16 3 H 0.04 1.07 8.06 -51.93 -0.42 0.65 16 4 C -0.50 -12.79 7.84 -34.44 -0.27 -13.06 16 5 H 0.06 1.58 6.77 -52.49 -0.36 1.22 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.53 -10.01 4.61 -227.73 -1.05 -11.06 16 13 C 0.05 0.78 4.78 -3.70 -0.02 0.76 16 14 C 0.14 1.90 6.68 -3.60 -0.02 1.88 16 15 N -0.58 -8.17 3.03 -130.73 -0.40 -8.57 16 16 C 0.42 6.44 15.73 -102.19 -1.61 4.84 16 17 N -0.47 -7.95 18.54 41.27 0.77 -7.18 16 18 C 0.14 1.85 6.68 -3.61 -0.02 1.82 16 19 C 0.04 0.57 5.14 -3.70 -0.02 0.55 16 20 H 0.01 0.16 6.69 -51.93 -0.35 -0.19 16 21 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 22 H 0.03 0.66 6.56 -51.93 -0.34 0.31 16 23 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 24 H 0.03 0.57 6.71 -51.93 -0.35 0.23 16 25 H 0.10 1.85 6.31 -51.93 -0.33 1.52 16 26 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 27 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 30 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 31 H 0.03 0.56 6.81 -51.93 -0.35 0.21 16 LS Contribution 253.65 15.07 3.82 3.82 Total: -1.00 -27.32 253.65 -7.19 -34.51 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.03 Total: -2.50 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.91 Total: -0.62 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.05 Total: -50.52 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.32 -7.19 -34.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014131.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.285 kcal (2) G-P(sol) polarization free energy of solvation -27.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds