Wall clock time and date at job start Mon Mar 30 2020 20:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47056 * 2 1 4 4 C 1.50701 * 109.46958 * 239.99942 * 2 1 3 5 5 H 1.07998 * 120.00099 * 240.00531 * 4 2 1 6 6 C 1.37880 * 119.99755 * 60.00311 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47008 * 60.00170 * 8 6 4 10 10 H 1.48496 * 109.46873 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47134 * 299.99873 * 8 6 4 12 12 N 1.46906 * 109.47053 * 120.00330 * 2 1 3 13 13 C 1.46904 * 110.99841 * 59.29926 * 12 2 1 14 14 C 1.53240 * 109.33739 * 172.74962 * 13 12 2 15 15 N 1.47085 * 108.52154 * 53.82625 * 14 13 12 16 16 C 1.35496 * 120.87637 * 128.83991 * 15 14 13 17 17 N 6.50585 * 86.08246 * 118.86706 * 2 1 3 18 18 C 1.47075 * 118.23896 * 308.81668 * 15 14 13 19 19 C 1.46896 * 110.99895 * 295.00006 * 12 2 1 20 20 H 1.09004 * 109.47006 * 299.99884 * 1 2 3 21 21 H 1.09002 * 109.47097 * 59.99865 * 1 2 3 22 22 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.49336 * 292.70649 * 13 12 2 25 25 H 1.08991 * 109.49364 * 52.78839 * 13 12 2 26 26 H 1.09007 * 109.62526 * 294.11763 * 14 13 12 27 27 H 1.08996 * 109.63001 * 173.53778 * 14 13 12 28 28 H 1.09004 * 109.62535 * 291.47568 * 18 15 14 29 29 H 1.08998 * 109.62753 * 170.89763 * 18 15 14 30 30 H 1.08999 * 109.49203 * 307.21161 * 19 12 2 31 31 H 1.08998 * 109.49713 * 67.26346 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4191 -5.2204 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 1.5350 -2.0787 1.2417 14 6 2.2093 -2.8169 2.4030 15 7 1.9932 -2.0445 3.6360 16 6 1.4995 -2.6369 4.7500 17 7 1.0855 -3.1336 5.6841 18 6 2.3277 -0.6124 3.6276 19 6 1.6487 0.0390 2.4181 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7088 1.1614 -3.4843 24 1 0.4547 -2.0820 1.3869 25 1 1.7778 -2.5777 0.3036 26 1 3.2783 -2.9056 2.2091 27 1 1.7703 -3.8087 2.5106 28 1 3.4081 -0.4892 3.5514 29 1 1.9670 -0.1468 4.5447 30 1 1.9740 1.0758 2.3330 31 1 0.5668 0.0066 2.5466 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261014131.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:34:53 Heat of formation + Delta-G solvation = 35.943541 kcal Electronic energy + Delta-G solvation = -13943.543234 eV Core-core repulsion = 11645.985983 eV Total energy + Delta-G solvation = -2297.557251 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.31638 -37.83720 -35.97172 -34.22545 -32.15015 -30.82789 -27.35375 -27.01378 -24.66525 -23.00802 -21.22475 -19.07943 -18.16825 -16.93374 -16.54091 -15.98351 -15.92127 -15.56831 -15.05193 -14.53021 -14.44389 -13.76699 -13.51413 -13.48747 -13.03149 -12.86065 -12.70550 -12.55961 -12.43249 -12.20726 -12.04253 -11.75705 -11.47614 -10.85410 -10.43832 -9.43946 -8.80467 -8.06046 -6.16369 1.48773 1.49455 1.52954 1.56515 1.81294 2.21268 2.47486 3.24132 3.36068 3.85132 4.15376 4.35149 4.38258 4.48876 4.56569 4.74819 4.84477 4.92047 4.95528 5.09697 5.12523 5.26546 5.36054 5.58114 5.74855 5.82391 5.88569 6.23141 6.48822 6.75529 6.97304 7.24531 7.53115 8.99862 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056097 B = 0.007992 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.013373 B = 3502.607919 C = 3741.557678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.012 0.988 4 C -0.512 4.512 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.272 1.272 12 N -0.533 5.533 13 C 0.048 3.952 14 C 0.146 3.854 15 N -0.576 5.576 16 C 0.438 3.562 17 N -0.500 5.500 18 C 0.148 3.852 19 C 0.036 3.964 20 H 0.023 0.977 21 H 0.059 0.941 22 H 0.028 0.972 23 H 0.259 0.741 24 H 0.019 0.981 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 -3.417 7.403 8.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.030 0.970 4 C -0.551 4.551 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.217 1.217 11 H -0.197 1.197 12 N -0.257 5.257 13 C -0.081 4.081 14 C 0.024 3.976 15 N -0.303 5.303 16 C 0.035 3.965 17 N -0.199 5.199 18 C 0.026 3.974 19 C -0.094 4.094 20 H 0.042 0.958 21 H 0.078 0.922 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.878 -3.986 8.507 9.826 hybrid contribution -0.787 0.229 -1.557 1.760 sum 2.091 -3.757 6.950 8.173 Atomic orbital electron populations 1.22213 1.00743 0.98940 0.99840 1.19053 0.89619 0.93261 0.87172 0.97043 1.21389 1.30471 1.12594 0.90633 0.91699 1.25666 0.95446 0.95765 1.01843 1.70006 1.37992 1.24317 1.23937 0.85643 0.78782 0.78673 0.78698 1.19625 1.21706 1.19683 1.62216 1.59411 1.02056 1.02021 1.22391 0.96242 0.90590 0.98882 1.21902 1.02031 0.93838 0.79826 1.44871 1.69623 1.09730 1.06027 1.23793 0.89975 0.93570 0.89145 1.81895 1.21944 1.07405 1.08610 1.21868 1.01199 0.76407 0.97916 1.22535 0.97514 0.98737 0.90601 0.95822 0.92248 0.95292 0.93158 0.96254 0.89601 0.89015 0.88782 0.88841 0.88375 0.89536 0.95855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.26 8.28 71.98 0.60 -6.66 16 2 C 0.22 10.04 2.35 44.17 0.10 10.15 16 3 H 0.01 0.61 8.06 -2.39 -0.02 0.59 16 4 C -0.51 -26.00 7.84 25.60 0.20 -25.80 16 5 H 0.06 3.20 6.77 -2.91 -0.02 3.18 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -51.11 11.32 21.45 0.24 -50.87 16 8 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 N -0.53 -19.63 4.61 -874.42 -4.03 -23.66 16 13 C 0.05 1.59 4.78 86.38 0.41 2.00 16 14 C 0.15 3.64 6.68 86.35 0.58 4.22 16 15 N -0.58 -14.54 3.03 -567.50 -1.72 -16.26 16 16 C 0.44 12.14 15.73 184.39 2.90 15.04 16 17 N -0.50 -15.66 18.54 17.21 0.32 -15.34 16 18 C 0.15 3.40 6.68 86.35 0.58 3.98 16 19 C 0.04 1.07 5.14 86.38 0.44 1.51 16 20 H 0.02 0.97 6.69 -2.38 -0.02 0.95 16 21 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 22 H 0.03 1.28 6.56 -2.39 -0.02 1.27 16 23 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 24 H 0.02 0.68 6.71 -2.39 -0.02 0.66 16 25 H 0.09 3.08 6.31 -2.39 -0.02 3.07 16 26 H 0.09 2.09 8.14 -2.38 -0.02 2.08 16 27 H 0.09 2.02 7.95 -2.39 -0.02 2.00 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.10 1.85 7.95 -2.39 -0.02 1.83 16 30 H 0.09 2.53 8.05 -2.39 -0.02 2.51 16 31 H 0.02 0.75 6.81 -2.39 -0.02 0.73 16 Total: -1.00 -57.85 253.65 4.22 -53.63 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.12 Total: 3.40 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 6.26 Total: 5.47 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -5.19 Total: -106.13 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -57.85 4.22 -53.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014131.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.573 kcal (2) G-P(sol) polarization free energy of solvation -57.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds