Wall clock time and date at job start Mon Mar 30 2020 20:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47196 * 2 1 4 4 C 1.52998 * 109.47298 * 239.99637 * 2 1 3 5 5 N 1.46500 * 109.47028 * 119.99916 * 2 1 3 6 6 C 1.35502 * 126.97998 * 354.44518 * 5 2 1 7 7 N 1.30523 * 107.30428 * 180.22497 * 6 5 2 8 8 N 1.28594 * 109.67571 * 359.77846 * 7 6 5 9 9 C 1.30520 * 109.67322 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.34820 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47257 * 83.63314 * 10 9 8 12 12 H 1.08000 * 119.99738 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00145 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00239 * 359.72643 * 13 11 10 15 15 Si 1.86806 * 120.00060 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47223 * 179.72477 * 15 13 11 17 17 H 1.48494 * 109.46729 * 299.72741 * 15 13 11 18 18 H 1.48497 * 109.46815 * 59.72343 * 15 13 11 19 19 H 1.09007 * 109.47040 * 300.00367 * 1 2 3 20 20 H 1.09003 * 109.47137 * 60.00240 * 1 2 3 21 21 H 1.08995 * 109.47395 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47076 * 186.80778 * 3 2 1 23 23 H 1.09001 * 109.47106 * 306.81190 * 3 2 1 24 24 H 1.09003 * 109.47074 * 66.81461 * 3 2 1 25 25 H 1.08995 * 109.47100 * 300.00428 * 4 2 1 26 26 H 1.09006 * 109.46976 * 60.00520 * 4 2 1 27 27 H 1.08995 * 109.47465 * 180.02562 * 4 2 1 28 28 H 1.07995 * 126.34693 * 0.02562 * 6 5 2 29 29 H 1.08998 * 109.47015 * 323.63595 * 10 9 8 30 30 H 1.09004 * 109.47285 * 203.63477 * 10 9 8 31 31 H 0.96998 * 119.99446 * 0.27390 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.2742 -1.1636 2.2251 7 7 2.0967 -1.7026 3.0834 8 7 3.3032 -1.5986 2.6509 9 6 3.3053 -0.9890 1.4968 10 6 4.5156 -0.6697 0.6575 11 6 4.8842 -1.8734 -0.1709 12 1 4.3002 -2.7789 -0.0973 13 6 5.9669 -1.8187 -1.0227 14 7 6.6748 -0.7143 -1.1164 15 14 6.4234 -3.3106 -2.0501 16 1 7.6124 -2.9941 -2.8815 17 1 6.7360 -4.4521 -1.1533 18 1 5.2845 -3.6714 -2.9320 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 3.1232 1.4449 -0.1218 23 1 1.5805 1.9903 -0.8228 24 1 1.7796 1.9200 0.9447 25 1 1.6766 -1.7489 -1.2491 26 1 1.6767 -0.2074 -2.1392 27 1 3.1299 -0.7217 -1.2490 28 1 0.2001 -1.1028 2.3192 29 1 5.3498 -0.4071 1.3080 30 1 4.2901 0.1693 -0.0009 31 1 6.4376 0.0604 -0.5831 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261204282.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:55 Heat of formation + Delta-G solvation = 41.100016 kcal Electronic energy + Delta-G solvation = -14317.783226 eV Core-core repulsion = 12020.449577 eV Total energy + Delta-G solvation = -2297.333649 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.06919 -38.52185 -35.97358 -32.92900 -32.63744 -29.14306 -28.45786 -28.29292 -25.48983 -23.84812 -22.33453 -20.69473 -19.02914 -17.77521 -17.00230 -16.03892 -15.87139 -15.60264 -15.09398 -14.76646 -14.26536 -14.11127 -13.53870 -13.29751 -13.20996 -12.78437 -12.70837 -12.54265 -12.37946 -12.15583 -11.93724 -11.86264 -11.18911 -11.15116 -10.98039 -10.58565 -9.98545 -8.70468 -6.42383 1.01811 1.52472 1.59253 1.65776 1.79698 1.98286 2.53853 3.10995 3.50321 3.67681 3.72514 3.75671 3.90789 4.25807 4.48923 4.57912 4.67578 4.73238 4.75361 4.82979 4.87684 4.92171 5.06624 5.19065 5.27447 5.32584 5.51871 5.79568 6.07415 6.14839 6.50558 7.31663 7.87576 8.69047 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.011308 C = 0.010018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.466360 B = 2475.612283 C = 2794.234634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.150 3.850 3 C -0.158 4.158 4 C -0.171 4.171 5 N -0.461 5.461 6 C 0.145 3.855 7 N -0.350 5.350 8 N -0.363 5.363 9 C 0.216 3.784 10 C 0.092 3.908 11 C -0.590 4.590 12 H 0.034 0.966 13 C -0.018 4.018 14 N -0.924 5.924 15 Si 1.110 2.890 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.265 1.265 19 H 0.082 0.918 20 H 0.107 0.893 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.110 0.890 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.260 0.740 29 H 0.009 0.991 30 H 0.045 0.955 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.523 4.287 -3.186 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.068 3.932 3 C -0.216 4.216 4 C -0.228 4.228 5 N -0.152 5.152 6 C -0.144 4.144 7 N -0.188 5.188 8 N -0.203 5.203 9 C -0.053 4.053 10 C 0.053 3.947 11 C -0.628 4.628 12 H 0.052 0.948 13 C -0.218 4.218 14 N -0.561 5.561 15 Si 0.932 3.068 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.190 1.190 19 H 0.101 0.899 20 H 0.126 0.874 21 H 0.089 0.911 22 H 0.062 0.938 23 H 0.129 0.871 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.275 0.725 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.983 3.054 -3.061 13.684 hybrid contribution -1.100 1.096 0.442 1.614 sum -14.083 4.150 -2.619 14.913 Atomic orbital electron populations 1.22177 0.88582 1.04147 1.05622 1.21277 0.97700 0.92465 0.81796 1.22282 1.01584 0.93513 1.04204 1.22401 1.03771 1.00032 0.96603 1.46818 1.05932 1.43317 1.19126 1.26967 1.01797 0.99642 0.85946 1.74007 0.96533 1.21516 1.26746 1.74109 1.14850 1.20416 1.10886 1.25175 0.88038 0.97666 0.94434 1.17850 0.86760 0.98076 0.92063 1.21793 1.16409 0.98474 1.26171 0.94784 1.27116 0.92586 1.04099 0.97989 1.70922 1.40668 1.03448 1.41040 0.83005 0.77007 0.71590 0.75205 1.20254 1.20719 1.19031 0.89924 0.87412 0.91139 0.93823 0.87132 0.91717 0.93321 0.88187 0.91627 0.72477 0.97299 0.93718 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 7.43 71.98 0.54 -1.88 16 2 C 0.15 4.09 1.05 3.60 0.00 4.09 16 3 C -0.16 -3.99 8.51 71.98 0.61 -3.38 16 4 C -0.17 -5.32 8.38 71.98 0.60 -4.72 16 5 N -0.46 -16.73 2.60 -474.79 -1.24 -17.97 16 6 C 0.14 4.88 11.68 180.11 2.10 6.98 16 7 N -0.35 -15.52 12.21 -59.99 -0.73 -16.25 16 8 N -0.36 -18.71 12.21 -50.15 -0.61 -19.33 16 9 C 0.22 10.27 6.77 137.98 0.93 11.21 16 10 C 0.09 4.74 3.89 29.10 0.11 4.86 16 11 C -0.59 -32.93 7.53 25.60 0.19 -32.74 16 12 H 0.03 1.98 7.74 -2.91 -0.02 1.96 16 13 C -0.02 -1.02 5.46 84.65 0.46 -0.56 16 14 N -0.92 -54.08 13.65 21.45 0.29 -53.78 16 15 Si 1.11 49.40 29.90 68.60 2.05 51.45 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H 0.08 1.09 7.72 -2.38 -0.02 1.07 16 20 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 21 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 22 H 0.04 1.39 5.76 -2.39 -0.01 1.38 16 23 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.06 2.69 4.17 -2.39 -0.01 2.68 16 28 H 0.26 5.38 7.29 -2.91 -0.02 5.36 16 29 H 0.01 0.51 8.01 -2.39 -0.02 0.49 16 30 H 0.05 2.21 4.32 -2.38 -0.01 2.20 16 31 H 0.26 15.21 7.22 -92.71 -0.67 14.54 16 Total: -1.00 -72.26 253.62 6.54 -65.72 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.22 Total: 6.30 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 5.56 Total: -16.14 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -2.29 Total: -107.33 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Total: -72.26 6.54 -65.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261204282.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.816 kcal (2) G-P(sol) polarization free energy of solvation -72.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds