Wall clock time and date at job start Mon Mar 30 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32763 * 125.69164 * 2 1 4 4 C 1.32979 * 109.22472 * 180.13999 * 3 2 1 5 5 C 1.39999 * 125.95927 * 179.82983 * 4 3 2 6 6 H 1.08001 * 119.99617 * 179.41600 * 5 4 3 7 7 C 1.40232 * 120.00437 * 359.69000 * 5 4 3 8 8 N 1.30688 * 119.99701 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00221 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47198 * 90.00000 * 9 7 5 11 11 H 1.48506 * 109.47289 * 209.99742 * 9 7 5 12 12 H 1.48499 * 109.47060 * 329.99766 * 9 7 5 13 13 N 1.37537 * 108.07599 * 359.56624 * 4 3 2 14 14 H 0.96999 * 126.55773 * 180.23135 * 13 4 3 15 15 C 1.36220 * 125.69248 * 179.65081 * 2 1 3 16 16 C 1.50707 * 126.40157 * 0.03836 * 15 2 1 17 17 C 1.52998 * 109.46752 * 305.81508 * 16 15 2 18 18 C 1.52999 * 109.47195 * 65.81435 * 16 15 2 19 19 N 1.46900 * 109.46923 * 185.81504 * 16 15 2 20 20 H 1.09005 * 109.47191 * 275.45736 * 1 2 3 21 21 H 1.08995 * 109.47343 * 35.46501 * 1 2 3 22 22 H 1.09004 * 109.47165 * 155.46655 * 1 2 3 23 23 H 0.97001 * 120.00489 * 179.97438 * 8 7 5 24 24 H 1.09001 * 109.47370 * 60.00009 * 17 16 15 25 25 H 1.09000 * 109.47219 * 179.97438 * 17 16 15 26 26 H 1.08998 * 109.47500 * 299.99859 * 17 16 15 27 27 H 1.09001 * 109.47101 * 64.51050 * 18 16 15 28 28 H 1.08998 * 109.46979 * 184.51994 * 18 16 15 29 29 H 1.09006 * 109.46947 * 304.51632 * 18 16 15 30 30 H 1.00903 * 110.99387 * 176.04340 * 19 16 15 31 31 H 1.00896 * 111.00113 * 299.99363 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2815 1.0783 0.0000 4 6 3.5568 0.7013 -0.0031 5 6 4.6663 1.5550 -0.0074 6 1 5.6646 1.1430 -0.0001 7 6 4.4816 2.9451 -0.0154 8 7 3.2736 3.4437 -0.0184 9 14 5.9621 4.0841 -0.0220 10 1 6.3545 4.3778 -1.4237 11 1 5.6151 5.3510 0.6707 12 1 7.0937 3.4289 0.6819 13 7 3.5954 -0.6735 0.0048 14 1 4.3905 -1.2291 0.0079 15 6 2.3017 -1.1063 0.0067 16 6 1.8383 -2.5404 0.0147 17 6 0.8777 -2.7594 1.1852 18 6 1.1199 -2.8515 -1.2998 19 7 2.9989 -3.4291 0.1607 20 1 -0.3634 0.0977 1.0230 21 1 -0.3634 0.8370 -0.5962 22 1 -0.3634 -0.9349 -0.4267 23 1 3.1456 4.4052 -0.0235 24 1 0.0166 -2.0999 1.0768 25 1 0.5422 -3.7964 1.1907 26 1 1.3895 -2.5377 2.1217 27 1 1.8255 -2.7731 -2.1269 28 1 0.7150 -3.8627 -1.2620 29 1 0.3073 -2.1400 -1.4470 30 1 2.7092 -4.3929 0.2335 31 1 3.6487 -3.3033 -0.6008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261323391.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:22 Heat of formation + Delta-G solvation = 39.451349 kcal Electronic energy + Delta-G solvation = -14037.070171 eV Core-core repulsion = 11739.665030 eV Total energy + Delta-G solvation = -2297.405141 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03353 -36.33485 -33.20076 -31.76594 -29.37944 -28.33573 -26.99419 -26.83611 -24.23431 -20.47457 -19.60269 -18.10744 -16.96418 -15.75928 -15.10950 -14.67555 -14.04247 -13.53458 -13.25594 -12.79659 -12.70493 -12.10199 -11.90085 -11.58304 -11.47476 -11.38222 -11.08638 -10.95143 -10.72848 -10.66204 -10.19238 -10.03718 -9.12569 -8.44218 -7.94351 -7.69798 -6.79266 -6.31434 -4.16855 3.09837 3.20271 3.23106 3.69033 4.09532 4.68916 4.73766 5.04044 5.38534 5.61376 5.70303 5.72300 5.92928 6.01782 6.13653 6.25304 6.30320 6.46429 6.59032 6.60646 6.74783 6.84091 7.24643 7.33777 7.51428 7.73767 7.84267 8.20370 8.36974 8.68465 9.07140 9.53728 10.34041 10.61927 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051969 B = 0.009039 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.652571 B = 3097.032802 C = 3443.488664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.014 3.986 3 N -0.509 5.509 4 C 0.375 3.625 5 C -0.467 4.467 6 H 0.076 0.924 7 C 0.083 3.917 8 N -0.745 5.745 9 Si 0.909 3.091 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.266 1.266 13 N -0.608 5.608 14 H 0.394 0.606 15 C -0.124 4.124 16 C 0.208 3.792 17 C -0.134 4.134 18 C -0.175 4.175 19 N -0.842 5.842 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.270 0.730 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.333 0.667 31 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -8.699 -0.961 8.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 N -0.232 5.232 4 C 0.129 3.871 5 C -0.507 4.507 6 H 0.094 0.906 7 C -0.141 4.141 8 N -0.370 5.370 9 Si 0.734 3.266 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.190 1.190 13 N -0.214 5.214 14 H 0.229 0.771 15 C -0.238 4.238 16 C 0.115 3.885 17 C -0.192 4.192 18 C -0.234 4.234 19 N -0.370 5.370 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.145 0.855 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.464 -7.296 -0.265 7.706 hybrid contribution 1.104 -1.004 -0.928 1.758 sum -1.360 -8.301 -1.194 8.496 Atomic orbital electron populations 1.20038 0.91213 1.00260 1.00368 1.20366 0.94752 0.89706 1.07224 1.71177 0.99012 1.25320 1.27652 1.20101 0.93255 0.78089 0.95612 1.18066 0.90991 0.90051 1.51561 0.90629 1.25657 0.96412 0.98363 0.93619 1.70018 1.21329 1.12847 1.32811 0.86325 0.81879 0.79569 0.78807 1.19803 1.20380 1.19000 1.43078 1.05875 1.07937 1.64530 0.77098 1.19856 0.85392 0.92786 1.25721 1.18791 0.88742 0.88050 0.92918 1.21901 0.98992 0.99902 0.98433 1.22689 1.01668 1.00403 0.98658 1.58899 1.17138 1.09269 1.51725 0.93183 0.92625 0.92918 0.91907 0.91442 0.93914 0.92245 0.93257 0.93670 0.91310 0.85510 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 8.70 36.00 0.31 -0.92 16 2 C 0.01 0.36 6.89 -82.92 -0.57 -0.21 16 3 N -0.51 -14.86 9.40 -8.95 -0.08 -14.94 16 4 C 0.37 10.58 7.61 -155.61 -1.18 9.40 16 5 C -0.47 -12.98 9.46 -38.17 -0.36 -13.34 16 6 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 7 C 0.08 2.22 5.50 -17.29 -0.10 2.13 16 8 N -0.74 -21.24 11.90 55.56 0.66 -20.58 16 9 Si 0.91 19.64 29.56 -169.99 -5.03 14.62 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 N -0.61 -14.58 6.05 -8.20 -0.05 -14.63 16 14 H 0.39 8.42 8.36 -40.82 -0.34 8.08 16 15 C -0.12 -2.78 5.70 -81.27 -0.46 -3.24 16 16 C 0.21 3.58 0.94 -132.75 -0.13 3.45 16 17 C -0.13 -2.13 8.50 37.16 0.32 -1.82 16 18 C -0.17 -2.66 8.64 37.16 0.32 -2.34 16 19 N -0.84 -12.68 8.49 -0.19 0.00 -12.68 16 20 H 0.05 0.95 8.05 -51.93 -0.42 0.54 16 21 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.05 0.90 4.50 -51.93 -0.23 0.66 16 23 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 24 H 0.07 1.06 5.39 -51.93 -0.28 0.78 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.09 5.62 -51.93 -0.29 0.79 16 30 H 0.33 4.11 8.98 -39.29 -0.35 3.76 16 31 H 0.33 4.89 8.62 -39.29 -0.34 4.55 16 LS Contribution 255.02 15.07 3.84 3.84 Total: -1.00 -31.61 255.02 -6.42 -38.03 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -3.92 Total: 13.22 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.85 Total: -6.89 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 0.53 Total: -62.83 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.61 -6.42 -38.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323391.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.483 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds