Wall clock time and date at job start Mon Mar 30 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47150 * 2 1 4 4 C 1.50704 * 109.47303 * 119.99611 * 2 1 3 5 5 N 1.30790 * 125.89724 * 300.14943 * 4 2 1 6 6 N 1.40049 * 108.41275 * 180.25727 * 5 4 2 7 7 C 1.46500 * 125.97735 * 179.73469 * 6 5 4 8 8 C 1.35217 * 108.04542 * 359.75203 * 6 5 4 9 9 C 1.36026 * 107.61532 * 359.97438 * 8 6 5 10 10 N 1.40042 * 126.14144 * 179.97438 * 9 8 6 11 11 C 1.36775 * 119.99953 * 0.02665 * 10 9 8 12 12 H 1.08004 * 119.99978 * 0.02562 * 11 10 9 13 13 C 1.38744 * 120.00588 * 180.02562 * 11 10 9 14 14 N 1.31647 * 119.99483 * 359.72361 * 13 11 10 15 15 Si 1.86800 * 120.00580 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72291 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72139 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72175 * 15 13 11 19 19 H 1.09001 * 109.47088 * 299.99726 * 1 2 3 20 20 H 1.08989 * 109.47077 * 60.00265 * 1 2 3 21 21 H 1.08996 * 109.46905 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47446 * 239.99624 * 2 1 3 23 23 H 1.08995 * 109.47337 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46468 * 300.00137 * 3 2 1 25 25 H 1.08997 * 109.47253 * 59.99506 * 3 2 1 26 26 H 1.09000 * 109.46975 * 270.02028 * 7 6 5 27 27 H 1.08997 * 109.46849 * 30.01880 * 7 6 5 28 28 H 1.08999 * 109.47340 * 150.02487 * 7 6 5 29 29 H 1.08001 * 126.18787 * 179.97438 * 8 6 5 30 30 H 0.96998 * 120.00632 * 180.02562 * 10 9 8 31 31 H 0.97000 * 120.00410 * 0.27513 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7863 -0.3670 2.4684 6 7 2.4357 -1.2731 3.3161 7 6 2.4212 -1.2434 4.7808 8 6 3.0788 -2.1799 2.5464 9 6 2.8427 -1.8574 1.2461 10 7 3.3264 -2.5421 0.1244 11 6 4.1156 -3.6476 0.2857 12 1 4.3653 -3.9926 1.2782 13 6 4.5953 -4.3258 -0.8255 14 7 4.2864 -3.9084 -2.0353 15 14 5.6725 -5.8359 -0.6052 16 1 7.0984 -5.4240 -0.5573 17 1 5.3121 -6.5203 0.6624 18 1 5.4633 -6.7639 -1.7455 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 3.2543 -0.6394 5.1402 27 1 1.4826 -0.8099 5.1260 28 1 2.5159 -2.2587 5.1658 29 1 3.6724 -3.0099 2.9000 30 1 3.1019 -2.2325 -0.7670 31 1 3.7268 -3.1244 -2.1498 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300899875.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:59 Heat of formation + Delta-G solvation = 50.828709 kcal Electronic energy + Delta-G solvation = -13750.355489 eV Core-core repulsion = 11453.443708 eV Total energy + Delta-G solvation = -2296.911781 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89812 -37.22611 -36.50445 -33.56188 -32.43610 -29.39657 -28.01142 -27.38705 -25.66401 -23.38393 -21.69077 -20.14334 -19.08236 -18.34174 -16.53003 -16.19208 -15.80199 -15.50293 -15.30451 -15.11992 -14.31722 -14.00517 -13.50195 -13.41569 -13.04295 -12.96343 -12.76884 -12.21708 -12.12548 -11.94834 -11.92749 -11.89045 -11.60572 -11.25424 -10.40581 -9.89380 -8.64708 -8.24615 -5.51708 1.07342 1.57012 1.64193 1.81757 1.88272 2.17317 2.59353 3.34415 3.46171 3.85265 3.89755 4.20153 4.27987 4.28385 4.52009 4.56378 4.70745 4.78014 4.80530 4.94853 5.02711 5.07315 5.13204 5.35961 5.39688 5.47442 5.83599 6.24513 6.44316 6.85886 6.95632 7.73790 7.81132 8.84169 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.009970 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.571489 B = 2807.621815 C = 3560.120136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.012 4.012 3 C -0.128 4.128 4 C 0.013 3.987 5 N -0.290 5.290 6 N -0.380 5.380 7 C 0.109 3.891 8 C -0.081 4.081 9 C 0.055 3.945 10 N -0.627 5.627 11 C -0.361 4.361 12 H 0.083 0.917 13 C -0.081 4.081 14 N -0.952 5.952 15 Si 1.136 2.864 16 H -0.279 1.279 17 H -0.268 1.268 18 H -0.288 1.288 19 H 0.060 0.940 20 H 0.082 0.918 21 H 0.038 0.962 22 H 0.063 0.937 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.164 0.836 30 H 0.374 0.626 31 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 6.003 9.000 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.032 4.032 3 C -0.186 4.186 4 C -0.157 4.157 5 N -0.115 5.115 6 N -0.170 5.170 7 C -0.031 4.031 8 C -0.230 4.230 9 C -0.058 4.058 10 N -0.250 5.250 11 C -0.491 4.491 12 H 0.101 0.899 13 C -0.274 4.274 14 N -0.595 5.595 15 Si 0.958 3.042 16 H -0.205 1.205 17 H -0.192 1.192 18 H -0.213 1.213 19 H 0.079 0.921 20 H 0.101 0.899 21 H 0.057 0.943 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.181 0.819 30 H 0.207 0.793 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.925 5.444 9.179 11.371 hybrid contribution -0.346 0.544 -0.142 0.660 sum -4.271 5.988 9.037 11.652 Atomic orbital electron populations 1.21703 0.92761 1.01261 1.02895 1.19508 0.96913 0.95899 0.90923 1.21705 1.00080 0.93941 1.02895 1.22133 1.02232 0.96806 0.94481 1.76690 1.19697 1.15280 0.99821 1.47860 1.40589 1.21827 1.06728 1.21955 1.04280 1.04686 0.72218 1.21361 1.10105 1.01568 0.89957 1.18157 1.02430 0.96309 0.88873 1.39841 1.53379 1.28855 1.02885 1.20490 1.27063 1.05365 0.96169 0.89931 1.27583 1.02185 1.06452 0.91193 1.70990 1.39200 1.26368 1.22953 0.82558 0.74259 0.71491 0.75917 1.20492 1.19242 1.21349 0.92088 0.89944 0.94318 0.91905 0.94335 0.89940 0.92092 0.90361 0.88809 0.88230 0.81897 0.79253 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.18 71.98 0.66 -3.14 16 2 C -0.01 -0.42 3.34 -11.54 -0.04 -0.45 16 3 C -0.13 -3.81 9.18 71.98 0.66 -3.15 16 4 C 0.01 0.53 5.74 43.25 0.25 0.78 16 5 N -0.29 -11.53 12.56 -47.04 -0.59 -12.12 16 6 N -0.38 -14.03 4.02 -368.75 -1.48 -15.52 16 7 C 0.11 2.58 11.47 127.77 1.47 4.05 16 8 C -0.08 -3.51 10.74 83.66 0.90 -2.61 16 9 C 0.06 2.66 6.90 37.85 0.26 2.92 16 10 N -0.63 -33.53 5.48 -185.00 -1.01 -34.54 16 11 C -0.36 -20.16 9.69 84.04 0.81 -19.35 16 12 H 0.08 4.44 6.47 -2.91 -0.02 4.42 16 13 C -0.08 -4.54 5.50 84.84 0.47 -4.07 16 14 N -0.95 -57.59 13.70 21.64 0.30 -57.29 16 15 Si 1.14 49.61 29.92 68.60 2.05 51.66 16 16 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 19 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.06 2.37 7.05 -2.39 -0.02 2.35 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.16 6.70 7.05 -2.91 -0.02 6.68 16 30 H 0.37 20.22 5.76 -92.71 -0.53 19.69 16 31 H 0.25 15.02 6.77 -92.71 -0.63 14.39 16 Total: -1.00 -68.30 265.10 5.43 -62.88 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.73 Total: 29.96 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 5.44 Total: -25.03 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -2.79 Total: -119.47 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.66 kcal Total: -68.30 5.43 -62.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300899875.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.704 kcal (2) G-P(sol) polarization free energy of solvation -68.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds