Wall clock time and date at job start Mon Mar 30 2020 20:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47278 * 2 1 4 4 H 1.09003 * 109.46824 * 54.78857 * 3 2 1 5 5 C 1.50693 * 109.47164 * 174.78779 * 3 2 1 6 6 H 1.08009 * 119.99742 * 120.00577 * 5 3 2 7 7 C 1.37877 * 120.00295 * 300.00035 * 5 3 2 8 8 N 1.31517 * 120.00040 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99750 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47118 * 89.99987 * 9 7 5 11 11 H 1.48504 * 109.47070 * 209.99884 * 9 7 5 12 12 H 1.48500 * 109.46895 * 329.99743 * 9 7 5 13 13 N 1.46898 * 109.47048 * 294.79246 * 3 2 1 14 14 C 1.46901 * 111.00338 * 153.06050 * 13 3 2 15 15 H 1.08998 * 110.42955 * 329.29484 * 14 13 3 16 16 C 1.54886 * 110.49066 * 91.97812 * 14 13 3 17 17 C 1.54884 * 102.74995 * 156.62382 * 16 14 13 18 18 C 1.54269 * 104.19701 * 322.05562 * 17 16 14 19 19 H 1.08993 * 117.76331 * 163.96407 * 18 17 16 20 20 C 1.55468 * 118.30410 * 320.02719 * 18 17 16 21 21 C 1.53002 * 59.83990 * 93.28903 * 20 18 17 22 22 H 1.09004 * 119.29837 * 111.70963 * 21 20 18 23 23 H 1.09001 * 109.47226 * 175.32208 * 1 2 3 24 24 H 1.08999 * 109.47306 * 295.32524 * 1 2 3 25 25 H 1.09007 * 109.47056 * 55.31863 * 1 2 3 26 26 H 1.09001 * 109.46815 * 240.00245 * 2 1 3 27 27 H 1.08993 * 109.47171 * 120.00224 * 2 1 3 28 28 H 0.96999 * 119.99942 * 179.97438 * 8 7 5 29 29 H 1.00909 * 111.00129 * 277.01165 * 13 3 2 30 30 H 1.08996 * 110.75736 * 274.94326 * 16 14 13 31 31 H 1.09001 * 110.75443 * 38.30594 * 16 14 13 32 32 H 1.09000 * 110.48959 * 203.38266 * 17 16 14 33 33 H 1.09000 * 110.59968 * 80.79212 * 17 16 14 34 34 H 1.09002 * 118.06018 * 346.15789 * 20 18 17 35 35 H 1.08997 * 117.16809 * 200.82165 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8397 5 6 3.5414 1.4444 0.1291 6 1 4.1494 1.8882 -0.6455 7 6 4.1390 0.8799 1.2360 8 7 5.4493 0.8820 1.3488 9 14 3.0874 0.1120 2.5753 10 1 2.8676 -1.3245 2.2696 11 1 3.7801 0.2395 3.8827 12 1 1.7785 0.8106 2.6385 13 7 1.6557 2.0977 -1.2573 14 6 1.5315 3.5504 -1.0775 15 1 1.2136 3.7821 -0.0610 16 6 2.8727 4.2536 -1.4027 17 6 2.4265 5.6938 -1.7569 18 6 1.1073 5.5011 -2.5331 19 1 0.4618 6.3699 -2.6608 20 6 1.0121 4.3238 -3.5440 21 6 0.5383 4.1382 -2.1011 22 1 -0.5251 4.0055 -1.9017 23 1 -0.3634 -1.0242 -0.0838 24 1 -0.3634 0.4396 0.9289 25 1 -0.3633 0.5848 -0.8451 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.8697 0.4852 2.1277 29 1 2.3101 1.8792 -1.9937 30 1 3.5288 4.2555 -0.5323 31 1 3.3607 3.7798 -2.2545 32 1 3.1717 6.1803 -2.3862 33 1 2.2547 6.2757 -0.8513 34 1 1.9353 3.8244 -3.8379 35 1 0.2486 4.3935 -4.3187 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393947708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:30:55 Heat of formation + Delta-G solvation = 19.515631 kcal Electronic energy + Delta-G solvation = -14388.266150 eV Core-core repulsion = 12193.536876 eV Total energy + Delta-G solvation = -2194.729275 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.28334 -35.88341 -32.18372 -31.57786 -29.97474 -27.34806 -25.07734 -23.11668 -22.35413 -19.88877 -19.32099 -18.90941 -16.75307 -16.04918 -15.18801 -14.48842 -13.80474 -13.56328 -12.95796 -12.54995 -12.47431 -12.22184 -11.99512 -11.64636 -11.51536 -11.14167 -10.82346 -10.62171 -10.52648 -10.45920 -10.17503 -9.75236 -9.60743 -9.41850 -9.26899 -9.08729 -8.54654 -7.27207 -6.10926 -4.11190 3.27019 3.37556 3.39937 4.00628 4.38635 4.88856 4.94838 5.19495 5.25908 5.44246 5.50478 5.64415 5.91074 5.96617 6.01885 6.04909 6.10955 6.11897 6.26558 6.28647 6.37104 6.48173 6.58804 6.69712 6.76274 6.79868 6.85379 7.02663 7.14721 7.31265 7.59753 8.11619 8.43068 8.53839 8.92675 9.53220 11.01752 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035761 B = 0.010527 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.793638 B = 2659.205246 C = 3164.490478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.182 3.818 4 H 0.030 0.970 5 C -0.541 4.541 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.672 5.672 14 C 0.122 3.878 15 H 0.078 0.922 16 C -0.147 4.147 17 C -0.094 4.094 18 C -0.180 4.180 19 H 0.102 0.898 20 C -0.153 4.153 21 C -0.139 4.139 22 H 0.101 0.899 23 H 0.032 0.968 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.335 0.665 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 5.655 -5.315 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.073 3.927 4 H 0.048 0.952 5 C -0.580 4.580 6 H 0.093 0.907 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.299 5.299 14 C 0.010 3.990 15 H 0.096 0.904 16 C -0.186 4.186 17 C -0.132 4.132 18 C -0.198 4.198 19 H 0.120 0.880 20 C -0.190 4.190 21 C -0.158 4.158 22 H 0.119 0.881 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.102 5.460 -5.089 11.771 hybrid contribution 0.557 -0.253 0.902 1.090 sum -8.545 5.207 -4.187 10.847 Atomic orbital electron populations 1.21744 0.97660 0.99461 1.01288 1.21818 0.93796 0.99505 1.00261 1.19643 0.94363 0.90614 0.88063 0.95210 1.21787 0.90511 1.38736 1.06979 0.90696 1.25013 0.94734 0.95366 0.97975 1.69918 1.08932 1.45259 1.29585 0.86833 0.80642 0.79878 0.80722 1.20559 1.22736 1.19018 1.60675 1.53873 1.06358 1.09031 1.21866 0.91880 0.88506 0.96704 0.90409 1.23162 0.98818 0.94658 1.02004 1.21863 0.94932 0.97881 0.98498 1.23517 0.99900 0.92248 1.04174 0.88000 1.23135 1.02734 1.00860 0.92311 1.23143 0.99225 0.98159 0.95254 0.88058 0.94902 0.94430 0.91672 0.92481 0.93868 0.92728 0.84721 0.90261 0.91717 0.92324 0.91458 0.89091 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.86 37.16 0.37 -2.32 16 2 C -0.12 -2.54 5.11 -26.73 -0.14 -2.67 16 3 C 0.18 4.20 1.57 -68.87 -0.11 4.09 16 4 H 0.03 0.73 6.44 -51.93 -0.33 0.40 16 5 C -0.54 -14.58 8.59 -34.44 -0.30 -14.88 16 6 H 0.08 2.17 7.56 -52.48 -0.40 1.77 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 9 Si 0.89 22.03 24.41 -169.99 -4.15 17.88 16 10 H -0.28 -6.79 6.83 56.52 0.39 -6.40 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.67 -13.32 5.52 -99.22 -0.55 -13.87 16 14 C 0.12 2.18 3.11 -66.05 -0.21 1.98 16 15 H 0.08 1.49 7.39 -51.93 -0.38 1.11 16 16 C -0.15 -2.59 5.10 -24.74 -0.13 -2.72 16 17 C -0.09 -1.36 6.78 -25.07 -0.17 -1.53 16 18 C -0.18 -2.45 7.16 -88.19 -0.63 -3.08 16 19 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 20 C -0.15 -2.10 9.94 -25.42 -0.25 -2.35 16 21 C -0.14 -2.11 6.64 -89.50 -0.59 -2.70 16 22 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.18 7.64 -51.93 -0.40 0.78 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.04 1.01 3.21 -51.93 -0.17 0.84 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.34 6.78 7.84 -39.29 -0.31 6.48 16 30 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 31 H 0.06 1.16 7.05 -51.93 -0.37 0.79 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.31 7.27 -51.93 -0.38 0.93 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 269.57 15.07 4.06 4.06 Total: -1.00 -28.13 269.57 -7.83 -35.95 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.71 Total: 6.60 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -2.25 Total: -24.26 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.23 Total: -40.23 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.13 -7.83 -35.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393947708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.469 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds