Wall clock time and date at job start Mon Mar 30 2020 20:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38219 * 120.00977 * 2 1 4 4 C 1.38227 * 120.02402 * 179.74165 * 3 2 1 5 5 C 1.38262 * 120.05195 * 0.25898 * 4 3 2 6 6 C 1.50699 * 119.99015 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46840 * 25.00472 * 6 5 4 8 8 O 1.42897 * 109.47263 * 145.00196 * 6 5 4 9 9 C 1.50704 * 109.47249 * 265.00398 * 6 5 4 10 10 H 1.07995 * 119.99782 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99919 * 179.97438 * 9 6 5 12 12 N 1.31523 * 119.99990 * 0.02562 * 11 9 6 13 13 Si 1.86796 * 119.99956 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.46834 * 60.00399 * 13 11 9 15 15 H 1.48506 * 109.47204 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47266 * 300.00319 * 13 11 9 17 17 C 1.38177 * 120.02487 * 359.97438 * 5 4 3 18 18 C 1.38438 * 120.01661 * 180.25771 * 2 1 3 19 19 F 1.35104 * 120.02404 * 359.97438 * 18 2 1 20 20 H 1.09006 * 109.46673 * 90.00104 * 1 2 3 21 21 H 1.09006 * 109.46707 * 209.99462 * 1 2 3 22 22 H 1.08995 * 109.47488 * 329.99993 * 1 2 3 23 23 H 1.08002 * 119.99072 * 0.02773 * 3 2 1 24 24 H 1.07999 * 119.97012 * 180.27779 * 4 3 2 25 25 H 0.96695 * 113.99973 * 60.00448 * 8 6 5 26 26 H 0.96993 * 119.99886 * 179.97438 * 12 11 9 27 27 H 1.07999 * 120.01221 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1972 0.0054 5 6 4.2733 0.0007 0.0054 6 6 5.7802 0.0027 0.0107 7 1 6.1407 0.9336 0.4483 8 8 6.2553 -1.1019 0.7828 9 6 6.2878 -0.1175 -1.4032 10 1 5.5889 -0.1878 -2.2236 11 6 7.6442 -0.1366 -1.6495 12 7 8.4952 -0.0504 -0.6504 13 14 8.2733 -0.2863 -3.4019 14 1 7.7790 0.8610 -4.2049 15 1 9.7583 -0.2842 -3.3967 16 1 7.7827 -1.5551 -3.9973 17 6 3.5843 -1.1971 0.0005 18 6 2.1995 -1.1987 -0.0054 19 9 1.5248 -2.3692 -0.0101 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6583 2.1322 0.0005 24 1 4.1198 2.1330 0.0099 25 1 5.9724 -1.9647 0.4505 26 1 9.4495 -0.0642 -0.8236 27 1 4.1256 -2.1316 0.0009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085878708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:31:53 Heat of formation + Delta-G solvation = -103.706968 kcal Electronic energy + Delta-G solvation = -13416.960023 eV Core-core repulsion = 10859.875354 eV Total energy + Delta-G solvation = -2557.084669 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.86514 -40.28994 -37.51215 -34.34210 -33.63872 -31.43164 -29.72371 -27.23696 -24.49100 -23.52405 -21.81946 -19.17484 -18.28653 -17.43147 -16.88576 -16.66763 -16.62537 -15.89323 -15.11270 -14.83051 -14.52996 -14.22629 -13.95504 -13.47300 -13.26245 -13.14332 -12.79312 -12.57331 -12.44574 -12.15325 -12.05340 -11.26502 -10.77443 -10.38691 -9.75018 -9.34278 -8.17012 -6.44939 0.27749 0.36569 1.40541 1.41687 1.50325 2.36221 2.72474 3.07522 3.32078 3.84284 3.87615 4.11838 4.22710 4.40366 4.47923 4.75056 4.80908 4.90516 5.08072 5.18210 5.25914 5.37210 5.45868 5.61143 5.87280 5.97924 6.07468 6.64234 7.24869 7.41607 8.85940 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044018 B = 0.008359 C = 0.008310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.956970 B = 3348.909843 C = 3368.466138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.084 4.084 4 C -0.135 4.135 5 C -0.073 4.073 6 C 0.259 3.741 7 H 0.042 0.958 8 O -0.576 6.576 9 C -0.577 4.577 10 H 0.055 0.945 11 C 0.030 3.970 12 N -0.897 5.897 13 Si 0.962 3.038 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.270 1.270 17 C -0.160 4.160 18 C 0.079 3.921 19 F -0.146 7.146 20 H 0.081 0.919 21 H 0.065 0.935 22 H 0.093 0.907 23 H 0.166 0.834 24 H 0.131 0.869 25 H 0.356 0.644 26 H 0.265 0.735 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 1.296 -0.279 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C -0.102 4.102 4 C -0.153 4.153 5 C -0.073 4.073 6 C 0.202 3.798 7 H 0.060 0.940 8 O -0.381 6.381 9 C -0.615 4.615 10 H 0.073 0.927 11 C -0.173 4.173 12 N -0.533 5.533 13 Si 0.786 3.214 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.195 1.195 17 C -0.179 4.179 18 C 0.060 3.940 19 F -0.124 7.124 20 H 0.099 0.901 21 H 0.084 0.916 22 H 0.112 0.888 23 H 0.184 0.816 24 H 0.149 0.851 25 H 0.202 0.798 26 H 0.073 0.927 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.872 1.743 0.141 12.990 hybrid contribution 0.593 -0.873 -1.079 1.509 sum -12.279 0.870 -0.938 12.345 Atomic orbital electron populations 1.20730 0.87865 1.04053 1.03454 1.20216 0.98511 0.91204 1.04001 1.21199 0.92926 0.98140 0.97910 1.21261 0.95042 0.97688 1.01288 1.20941 0.98108 0.93349 0.94932 1.18315 0.84142 0.86782 0.90590 0.94013 1.86540 1.78520 1.16642 1.56389 1.21769 0.92259 1.54423 0.93037 0.92667 1.25883 0.97057 0.93210 1.01158 1.70188 1.02538 1.47737 1.32887 0.85582 0.77094 0.79141 0.79615 1.19142 1.20678 1.19470 1.20869 0.92549 0.99433 1.05045 1.17644 0.89555 0.81513 1.05331 1.91419 1.80235 1.46543 1.94252 0.90077 0.91611 0.88791 0.81642 0.85086 0.79772 0.92652 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 9.83 71.24 0.70 -1.43 15 2 C -0.14 -4.02 5.89 -19.82 -0.12 -4.13 15 3 C -0.08 -2.39 9.70 22.26 0.22 -2.17 15 4 C -0.13 -4.85 9.68 22.27 0.22 -4.63 15 5 C -0.07 -3.12 4.94 -19.87 -0.10 -3.22 15 6 C 0.26 13.41 3.07 29.10 0.09 13.50 15 7 H 0.04 2.36 8.05 -2.39 -0.02 2.34 15 8 O -0.58 -30.51 12.53 -148.98 -1.87 -32.37 15 9 C -0.58 -31.73 8.75 25.60 0.22 -31.51 15 10 H 0.06 3.00 7.74 -2.91 -0.02 2.97 15 11 C 0.03 1.66 5.40 84.65 0.46 2.12 15 12 N -0.90 -52.97 12.84 21.45 0.28 -52.70 15 13 Si 0.96 43.05 29.54 68.60 2.03 45.08 15 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 17 C -0.16 -6.35 9.31 22.31 0.21 -6.14 15 18 C 0.08 2.73 7.24 22.37 0.16 2.89 15 19 F -0.15 -4.86 16.48 44.97 0.74 -4.12 15 20 H 0.08 1.48 8.14 -2.38 -0.02 1.46 15 21 H 0.06 1.34 7.65 -2.38 -0.02 1.32 15 22 H 0.09 1.43 8.09 -2.39 -0.02 1.41 15 23 H 0.17 3.29 8.06 -2.91 -0.02 3.26 15 24 H 0.13 4.46 8.06 -2.91 -0.02 4.44 15 25 H 0.36 16.76 7.38 -74.06 -0.55 16.21 15 26 H 0.26 14.75 8.31 -92.71 -0.77 13.98 15 27 H 0.13 4.89 6.61 -2.91 -0.02 4.87 15 Total: -1.00 -63.90 244.59 3.87 -60.02 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.64 Total: 18.81 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 2.06 Total: -34.72 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.28 Total: -52.70 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.87 Total: -32.37 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.74 Total: -4.12 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -63.90 3.87 -60.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.682 kcal (2) G-P(sol) polarization free energy of solvation -63.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds