Wall clock time and date at job start Mon Mar 30 2020 20:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.62190 * 304.62265 * 12 11 10 14 14 C 1.53225 * 109.62890 * 184.04692 * 12 11 10 15 15 C 1.52954 * 109.40701 * 185.65584 * 14 12 11 16 16 C 1.52960 * 109.81574 * 63.59789 * 15 14 12 17 17 C 1.53228 * 109.40469 * 296.40045 * 16 15 14 18 18 C 1.51267 * 109.62487 * 65.00007 * 12 11 10 19 19 O 1.20763 * 120.85282 * 351.04201 * 18 12 11 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 24 24 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 25 25 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 26 26 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 27 27 H 1.08998 * 109.48272 * 305.63613 * 14 12 11 28 28 H 1.09008 * 109.48191 * 65.67724 * 14 12 11 29 29 H 1.09006 * 109.41480 * 303.49339 * 15 14 12 30 30 H 1.09004 * 109.35808 * 183.67068 * 15 14 12 31 31 H 1.09005 * 109.48340 * 176.42398 * 16 15 14 32 32 H 1.09001 * 109.49068 * 56.39090 * 16 15 14 33 33 H 1.08991 * 109.62702 * 294.91064 * 17 16 15 34 34 H 1.09003 * 109.62648 * 174.33782 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4748 -6.1499 0.0214 13 1 3.1565 -6.0527 -0.8235 14 6 1.7151 -7.4771 -0.0750 15 6 2.6998 -8.6381 0.0727 16 6 3.3354 -8.6052 1.4636 17 6 4.1561 -7.3205 1.6180 18 6 3.2618 -6.1391 1.3132 19 8 3.1788 -5.2109 2.0813 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 2.8721 -3.6081 -0.8798 24 1 2.8721 -3.6002 0.9002 25 1 0.8536 -5.0411 0.9058 26 1 0.8541 -5.0485 -0.8741 27 1 0.9707 -7.5284 0.7195 28 1 1.2188 -7.5423 -1.0434 29 1 3.4794 -8.5506 -0.6841 30 1 2.1693 -9.5810 -0.0610 31 1 3.9876 -9.4700 1.5859 32 1 2.5527 -8.6300 2.2218 33 1 4.9937 -7.3352 0.9208 34 1 4.5279 -7.2441 2.6398 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034734021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:32:20 Heat of formation + Delta-G solvation = -99.616743 kcal Electronic energy + Delta-G solvation = -13863.490169 eV Core-core repulsion = 11565.876265 eV Total energy + Delta-G solvation = -2297.613904 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14397 -37.40857 -36.38120 -34.55602 -32.07363 -30.07864 -28.01571 -25.18787 -23.25447 -22.57182 -21.43017 -19.93118 -18.47814 -17.25454 -16.78605 -16.48822 -15.59785 -15.29686 -15.09493 -14.80631 -14.34720 -13.96614 -13.84336 -13.35394 -13.23352 -12.92339 -12.65295 -12.49649 -12.41843 -11.97666 -11.93518 -11.64702 -11.52220 -11.39391 -11.31660 -10.83352 -10.58968 -10.05100 -8.22866 -6.34722 1.08694 1.35558 1.37413 1.51002 2.38544 3.09044 3.16117 3.73042 3.90669 3.93734 4.12316 4.24854 4.39682 4.47730 4.54235 4.63862 4.68373 4.83345 5.00160 5.01789 5.05912 5.16524 5.19429 5.25952 5.27539 5.34364 5.39629 5.51060 5.53244 5.77275 5.85164 6.24011 6.69670 6.81773 7.34331 8.89587 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.062698 B = 0.005996 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.480377 B = 4668.598271 C = 4924.161892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.108 4.108 11 C -0.100 4.100 12 C -0.135 4.135 13 H 0.119 0.881 14 C -0.106 4.106 15 C -0.120 4.120 16 C -0.110 4.110 17 C -0.164 4.164 18 C 0.351 3.649 19 O -0.495 6.495 20 H 0.265 0.735 21 H -0.020 1.020 22 H -0.007 1.007 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -19.867 -0.963 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.145 4.145 11 C -0.138 4.138 12 C -0.153 4.153 13 H 0.137 0.863 14 C -0.144 4.144 15 C -0.157 4.157 16 C -0.147 4.147 17 C -0.202 4.202 18 C 0.229 3.771 19 O -0.371 6.371 20 H 0.073 0.927 21 H -0.002 1.002 22 H 0.011 0.989 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.274 -19.284 -0.556 20.618 hybrid contribution -0.090 1.350 0.183 1.365 sum 7.184 -17.934 -0.374 19.323 Atomic orbital electron populations 1.70111 1.07853 1.27784 1.51764 1.26047 0.95875 1.03540 0.94562 0.85343 0.78891 0.78396 0.78078 1.18797 1.19661 1.20200 1.21737 0.93343 0.92697 1.50550 0.92750 1.18994 0.94445 0.93531 0.94156 1.21611 0.98332 0.94170 1.00420 1.21448 0.97684 0.93596 1.01064 1.22012 0.98440 0.96898 0.97989 0.86341 1.21609 0.98047 0.91442 1.03279 1.21602 0.98893 0.98093 0.97095 1.21552 0.99368 0.95895 0.97920 1.22363 0.99362 0.94025 1.04406 1.25625 0.79419 0.85812 0.86239 1.90423 1.59689 1.37215 1.49761 0.92665 1.00172 0.98883 0.93340 0.92948 0.94257 0.91232 0.92510 0.89569 0.89912 0.89370 0.88299 0.92407 0.86230 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.18 13.29 21.45 0.28 -59.90 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 46.92 29.54 68.60 2.03 48.94 16 4 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.55 -34.03 9.11 25.60 0.23 -33.79 16 8 H 0.05 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.11 -5.07 4.90 30.59 0.15 -4.92 16 11 C -0.10 -3.72 4.38 30.59 0.13 -3.59 16 12 C -0.13 -3.56 2.48 -11.28 -0.03 -3.59 16 13 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 14 C -0.11 -1.99 5.23 30.65 0.16 -1.83 16 15 C -0.12 -1.47 5.81 30.57 0.18 -1.29 16 16 C -0.11 -1.46 5.94 30.66 0.18 -1.28 16 17 C -0.16 -3.03 6.17 30.11 0.19 -2.84 16 18 C 0.35 10.24 6.40 29.46 0.19 10.43 16 19 O -0.50 -20.10 14.66 -1.46 -0.02 -20.12 16 20 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 21 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 22 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 23 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.05 2.63 5.70 -2.38 -0.01 2.62 16 25 H 0.04 1.58 8.11 -2.39 -0.02 1.56 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.83 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -75.89 275.36 5.33 -70.56 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 1.04 Total: 1.28 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 1.99 Total: -40.77 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.28 Total: -59.90 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.02 Total: -20.12 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -75.89 5.33 -70.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034734021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.054 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds