Wall clock time and date at job start Mon Mar 30 2020 20:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99760 * 2 1 4 4 H 1.48499 * 109.47061 * 239.99899 * 3 2 1 5 5 H 1.48510 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46905 * 119.99904 * 3 2 1 7 7 C 1.37864 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00395 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47442 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47089 * 180.02562 * 11 10 9 13 13 H 1.09007 * 109.62713 * 55.37925 * 12 11 10 14 14 C 1.53227 * 109.78832 * 175.86004 * 12 11 10 15 15 C 1.52953 * 109.40646 * 174.43401 * 14 12 11 16 16 C 1.52961 * 109.82021 * 296.40220 * 15 14 12 17 17 C 1.52796 * 109.48283 * 63.46833 * 16 15 14 18 18 C 1.51272 * 109.62575 * 295.00418 * 12 11 10 19 19 O 1.20763 * 120.84846 * 8.71656 * 18 12 11 20 20 H 0.97005 * 120.00094 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.46934 * 60.00040 * 9 7 2 22 22 H 1.08998 * 109.47081 * 300.00233 * 9 7 2 23 23 H 1.08998 * 109.47015 * 60.00437 * 10 9 7 24 24 H 1.08998 * 109.47253 * 300.00225 * 10 9 7 25 25 H 1.08993 * 109.47354 * 60.00415 * 11 10 9 26 26 H 1.08998 * 109.47355 * 300.00180 * 11 10 9 27 27 H 1.09001 * 109.48411 * 294.41915 * 14 12 11 28 28 H 1.09002 * 109.48188 * 54.44068 * 14 12 11 29 29 H 1.09002 * 109.41592 * 56.50905 * 15 14 12 30 30 H 1.09005 * 109.41175 * 176.36927 * 15 14 12 31 31 H 1.08996 * 109.48040 * 183.57995 * 16 15 14 32 32 H 1.08998 * 109.47900 * 303.60644 * 16 15 14 33 33 H 1.09005 * 109.56088 * 185.80083 * 17 16 15 34 34 H 1.08993 * 109.46647 * 65.36340 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1566 -6.0491 0.8426 14 6 1.7188 -7.4787 0.1029 15 6 2.7068 -8.6378 -0.0379 16 6 3.3422 -8.6117 -1.4290 17 6 4.1548 -7.3283 -1.5941 18 6 3.2617 -6.1448 -1.2937 19 8 3.1752 -5.2220 -2.0678 20 1 -0.4850 0.8401 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8727 -3.6046 0.8877 24 1 2.8714 -3.6038 -0.8922 25 1 0.8528 -5.0447 -0.8904 26 1 0.8547 -5.0449 0.8894 27 1 1.2227 -7.5394 1.0716 28 1 0.9742 -7.5369 -0.6910 29 1 3.4862 -8.5434 0.7182 30 1 2.1798 -9.5819 0.1009 31 1 3.9967 -9.4754 -1.5460 32 1 2.5594 -8.6434 -2.1868 33 1 4.5230 -7.2585 -2.6177 34 1 4.9948 -7.3384 -0.8997 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034734022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:32:22 Heat of formation + Delta-G solvation = -79.312804 kcal Electronic energy + Delta-G solvation = -13862.218117 eV Core-core repulsion = 11565.484658 eV Total energy + Delta-G solvation = -2296.733459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.98784 -36.37173 -34.63462 -32.63113 -30.56625 -28.94111 -26.29028 -23.48408 -22.20296 -21.24347 -19.79130 -18.88976 -16.17159 -15.98598 -15.67275 -14.59797 -14.41588 -14.32102 -13.69704 -13.47357 -13.03648 -12.55214 -12.24206 -11.88488 -11.81114 -11.37192 -11.15213 -10.97815 -10.82000 -10.75972 -10.65046 -10.34708 -10.27051 -9.60688 -9.18683 -8.88994 -8.77483 -8.22136 -5.88724 -3.89971 2.22896 3.40405 3.43685 3.47204 4.19712 4.54784 4.64273 4.71312 4.76323 4.98844 5.22444 5.37407 5.41467 5.46415 5.46830 5.64887 5.75911 5.82797 5.89456 5.96914 6.09494 6.16196 6.27148 6.40388 6.61891 6.96513 7.12432 7.35051 7.78169 7.86559 8.02085 8.14358 8.57801 9.17145 9.73009 11.22852 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.062730 B = 0.005993 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.250943 B = 4671.137599 C = 4925.515756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.023 3.977 10 C -0.120 4.120 11 C -0.105 4.105 12 C -0.137 4.137 13 H 0.099 0.901 14 C -0.110 4.110 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.171 4.171 18 C 0.356 3.644 19 O -0.434 6.434 20 H 0.259 0.741 21 H 0.014 0.986 22 H 0.011 0.989 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.878 -18.409 0.139 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.157 4.157 11 C -0.143 4.143 12 C -0.156 4.156 13 H 0.117 0.883 14 C -0.147 4.147 15 C -0.162 4.162 16 C -0.150 4.150 17 C -0.209 4.209 18 C 0.229 3.771 19 O -0.305 6.305 20 H 0.069 0.931 21 H 0.032 0.968 22 H 0.030 0.970 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.672 -17.788 -0.285 18.673 hybrid contribution 0.483 0.902 0.100 1.028 sum 6.155 -16.886 -0.185 17.974 Atomic orbital electron populations 1.69968 1.06021 1.26470 1.51369 1.25023 0.94839 0.99136 0.95557 0.86680 0.79594 0.83284 0.78562 1.20276 1.21321 1.20329 1.21265 0.92968 0.91275 1.49895 0.92923 1.19059 0.94034 0.91476 0.96815 1.21801 0.99426 0.93655 1.00837 1.21567 0.97103 0.93930 1.01661 1.21984 0.99017 0.97025 0.97535 0.88298 1.21593 0.97825 0.92478 1.02848 1.21598 0.99045 0.98630 0.96963 1.21427 0.99427 0.96327 0.97858 1.22262 0.99468 0.95319 1.03833 1.24844 0.79763 0.85494 0.86981 1.90434 1.57429 1.34959 1.47686 0.93108 0.96760 0.97016 0.94237 0.91445 0.92236 0.92067 0.90841 0.91563 0.91463 0.91489 0.91153 0.91610 0.89742 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.29 55.43 0.74 -27.58 16 2 C 0.05 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.71 29.54 -169.99 -5.02 17.69 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.65 9.11 -34.44 -0.31 -15.96 16 8 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.12 -2.72 4.90 -26.73 -0.13 -2.85 16 11 C -0.11 -1.90 4.39 -26.73 -0.12 -2.02 16 12 C -0.14 -1.89 2.47 -91.37 -0.23 -2.11 16 13 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.11 -1.16 5.24 -26.64 -0.14 -1.30 16 15 C -0.12 -1.02 5.81 -26.78 -0.16 -1.18 16 16 C -0.11 -0.95 5.92 -26.86 -0.16 -1.10 16 17 C -0.17 -1.78 6.14 -27.71 -0.17 -1.95 16 18 C 0.36 5.26 6.41 -28.47 -0.18 5.08 16 19 O -0.43 -8.47 14.66 6.00 0.09 -8.38 16 20 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 21 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.62 5.71 -51.93 -0.30 1.33 16 25 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 275.35 15.07 4.15 4.15 Total: -1.00 -33.55 275.35 -7.63 -41.18 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -5.75 Total: -5.73 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -1.83 Total: -21.33 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.74 Total: -27.58 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.55 -7.63 -41.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034734022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.133 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds