Wall clock time and date at job start Mon Mar 30 2020 20:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47088 * 60.00147 * 9 7 5 11 11 H 1.48496 * 109.47117 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47600 * 300.00319 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.40785 * 119.99953 * 275.00519 * 13 3 2 15 15 C 1.38774 * 122.60899 * 179.73779 * 14 13 3 16 16 C 1.33411 * 114.87848 * 179.75888 * 15 14 13 17 17 S 1.75861 * 109.69269 * 0.47324 * 16 15 14 18 18 C 1.33742 * 122.60976 * 0.02562 * 14 13 3 19 19 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 20 20 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 21 21 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 23 23 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 24 24 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 25 25 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 26 26 H 1.07995 * 122.55640 * 359.97438 * 15 14 13 27 27 H 1.07998 * 125.15939 * 180.23700 * 16 15 14 28 28 H 1.08005 * 125.19920 * 0.03191 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5975 0.1471 -0.2347 11 1 6.3979 0.2165 -2.6501 12 1 6.4997 2.2813 -1.3819 13 7 1.6524 2.0975 1.2518 14 6 0.3808 2.6897 1.3720 15 6 -0.0442 3.3193 2.5334 16 6 -1.2747 3.8314 2.4761 17 16 -1.9758 3.5137 0.8949 18 6 -0.5136 2.6843 0.3778 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.8295 -0.0613 -2.9496 25 1 2.2719 2.1231 1.9978 26 1 0.5754 3.3923 3.4150 27 1 -1.7674 4.3577 3.2803 28 1 -0.3615 2.2384 -0.5941 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085534607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:33:51 Heat of formation + Delta-G solvation = 32.862276 kcal Electronic energy + Delta-G solvation = -12012.014630 eV Core-core repulsion = 9961.639313 eV Total energy + Delta-G solvation = -2050.375317 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.24968 -35.04076 -32.16817 -30.53464 -28.44604 -26.31414 -23.37162 -22.37317 -19.74897 -18.51098 -17.50190 -16.08735 -15.38689 -14.63368 -13.93539 -13.73038 -13.32224 -12.58260 -12.13942 -11.90096 -11.64910 -11.52185 -11.21743 -10.89662 -10.83292 -10.38971 -10.16617 -10.08770 -9.64059 -9.14512 -8.87011 -8.39052 -8.08058 -6.34601 -6.11861 -4.19905 1.67226 2.29812 2.71116 3.25978 3.30961 3.32941 3.62615 4.30548 4.77916 5.19439 5.46728 5.76978 6.14560 6.31933 6.39626 6.43689 6.59369 6.84498 6.87854 7.05834 7.09801 7.32684 7.56232 7.70989 7.89575 8.16135 8.46181 8.78996 9.02071 9.47147 10.93277 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.053408 B = 0.008347 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.140107 B = 3353.890917 C = 3580.219207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.282 3.718 4 H 0.036 0.964 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.725 5.725 14 C 0.196 3.804 15 C -0.160 4.160 16 C -0.200 4.200 17 S 0.049 5.951 18 C -0.317 4.317 19 H 0.051 0.949 20 H 0.043 0.957 21 H 0.025 0.975 22 H 0.096 0.904 23 H 0.032 0.968 24 H 0.264 0.736 25 H 0.386 0.614 26 H 0.132 0.868 27 H 0.156 0.844 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 3.595 6.120 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.179 3.821 4 H 0.053 0.947 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.083 3.917 15 C -0.196 4.196 16 C -0.335 4.335 17 S 0.307 5.693 18 C -0.460 4.460 19 H 0.070 0.930 20 H 0.062 0.938 21 H 0.044 0.956 22 H 0.115 0.885 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.219 0.781 26 H 0.150 0.850 27 H 0.173 0.827 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.088 3.723 5.065 10.243 hybrid contribution 2.595 -0.389 0.802 2.744 sum -5.493 3.334 5.867 8.701 Atomic orbital electron populations 1.22143 0.98948 0.98816 1.00656 1.22023 0.92274 1.00577 1.02240 1.18598 0.94041 0.88515 0.80982 0.94678 1.21220 0.91053 1.38453 1.06042 0.92296 1.24869 0.98526 0.94846 0.95437 1.69866 1.35170 1.37954 1.09427 0.86532 0.85026 0.78297 0.77394 1.20220 1.21156 1.20213 1.45296 1.11302 1.61012 1.17731 1.16919 0.88277 0.94299 0.92224 1.19895 0.97037 1.03655 0.99000 1.25220 0.99226 1.08008 1.01088 1.83740 1.19691 1.57784 1.08113 1.24700 0.97295 1.18736 1.05264 0.92987 0.93841 0.95560 0.88549 0.94910 0.92594 0.78076 0.85000 0.82686 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.27 37.16 0.31 -2.78 15 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 15 3 C 0.28 6.92 2.21 -69.08 -0.15 6.77 15 4 H 0.04 0.96 6.80 -51.93 -0.35 0.61 15 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 15 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 15 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 15 8 N -0.89 -24.55 11.29 55.43 0.63 -23.92 15 9 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 15 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 13 N -0.73 -15.36 5.23 -54.33 -0.28 -15.65 15 14 C 0.20 3.78 5.46 -85.12 -0.46 3.32 15 15 C -0.16 -2.60 10.14 -41.07 -0.42 -3.02 15 16 C -0.20 -2.90 11.22 29.04 0.33 -2.57 15 17 S 0.05 0.77 23.33 -107.50 -2.51 -1.74 15 18 C -0.32 -6.09 7.86 29.16 0.23 -5.86 15 19 H 0.05 1.06 5.38 -51.93 -0.28 0.78 15 20 H 0.04 0.90 6.48 -51.93 -0.34 0.56 15 21 H 0.03 0.50 8.14 -51.93 -0.42 0.07 15 22 H 0.10 2.54 5.95 -51.93 -0.31 2.23 15 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.26 6.99 8.31 -40.82 -0.34 6.66 15 25 H 0.39 7.66 8.63 -40.82 -0.35 7.31 15 26 H 0.13 1.86 8.06 -52.49 -0.42 1.43 15 27 H 0.16 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.16 3.41 4.76 -52.48 -0.25 3.16 15 LS Contribution 241.78 15.07 3.64 3.64 Total: -1.00 -27.10 241.78 -7.37 -34.46 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.11 Total: 7.60 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.71 Total: -20.13 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.34 Total: -39.57 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.10 -7.37 -34.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085534607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.327 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds