Wall clock time and date at job start Mon Mar 30 2020 20:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47088 * 60.00147 * 9 7 5 11 11 H 1.48496 * 109.47117 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47600 * 300.00319 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.40785 * 119.99953 * 275.00519 * 13 3 2 15 15 C 1.38774 * 122.60899 * 179.73779 * 14 13 3 16 16 C 1.33411 * 114.87848 * 179.75888 * 15 14 13 17 17 S 1.75861 * 109.69269 * 0.47324 * 16 15 14 18 18 C 1.33742 * 122.60976 * 0.02562 * 14 13 3 19 19 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 20 20 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 21 21 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 23 23 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 24 24 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 25 25 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 26 26 H 1.07995 * 122.55640 * 359.97438 * 15 14 13 27 27 H 1.07998 * 125.15939 * 180.23700 * 16 15 14 28 28 H 1.08005 * 125.19920 * 0.03191 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5975 0.1471 -0.2347 11 1 6.3979 0.2165 -2.6501 12 1 6.4997 2.2813 -1.3819 13 7 1.6524 2.0975 1.2518 14 6 0.3808 2.6897 1.3720 15 6 -0.0442 3.3193 2.5334 16 6 -1.2747 3.8314 2.4761 17 16 -1.9758 3.5137 0.8949 18 6 -0.5136 2.6843 0.3778 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.8295 -0.0613 -2.9496 25 1 2.2719 2.1231 1.9978 26 1 0.5754 3.3923 3.4150 27 1 -1.7674 4.3577 3.2803 28 1 -0.3615 2.2384 -0.5941 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085534607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:33:51 Heat of formation + Delta-G solvation = 16.787972 kcal Electronic energy + Delta-G solvation = -12012.711664 eV Core-core repulsion = 9961.639313 eV Total energy + Delta-G solvation = -2051.072352 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.76342 -36.75405 -34.07766 -32.25831 -29.98297 -28.13475 -25.12952 -23.94240 -21.48501 -20.06089 -19.06998 -17.84151 -17.10381 -16.33778 -15.63320 -15.31115 -14.85112 -14.26443 -13.70018 -13.52214 -13.25335 -13.19555 -12.93888 -12.69013 -12.66534 -12.06705 -11.89130 -11.62845 -11.49322 -11.02604 -10.65796 -10.28362 -9.37346 -8.17340 -7.87190 -6.31517 0.38860 1.04867 1.34876 1.42554 1.43557 1.51404 2.21853 2.38827 3.11313 3.18839 4.23542 4.47638 4.58827 4.63159 4.78117 4.92405 5.03844 5.15764 5.28636 5.41724 5.46987 5.48233 5.61254 5.74329 5.92132 6.18993 6.59512 6.90149 7.31294 7.43804 8.88349 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.053408 B = 0.008347 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.140107 B = 3353.890917 C = 3580.219207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.292 3.708 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.060 0.940 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.731 5.731 14 C 0.183 3.817 15 C -0.179 4.179 16 C -0.175 4.175 17 S 0.084 5.916 18 C -0.349 4.349 19 H 0.057 0.943 20 H 0.037 0.963 21 H 0.042 0.958 22 H 0.068 0.932 23 H 0.028 0.972 24 H 0.265 0.735 25 H 0.392 0.608 26 H 0.155 0.845 27 H 0.198 0.802 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 4.409 7.710 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.187 3.813 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.078 0.922 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.789 3.211 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.360 5.360 14 C 0.070 3.930 15 C -0.213 4.213 16 C -0.311 4.311 17 S 0.342 5.658 18 C -0.491 4.491 19 H 0.076 0.924 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.226 0.774 26 H 0.172 0.828 27 H 0.215 0.785 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.630 4.552 6.674 11.821 hybrid contribution 2.652 -0.582 0.313 2.733 sum -5.978 3.970 6.987 10.016 Atomic orbital electron populations 1.21980 0.96669 0.99793 1.00656 1.21857 0.94274 0.99768 1.00522 1.18208 0.92957 0.88645 0.81442 0.98306 1.21584 0.92328 1.38526 1.06297 0.92198 1.25673 1.02924 0.94452 0.95108 1.70005 1.36863 1.38504 1.09816 0.85518 0.79699 0.78346 0.77492 1.19420 1.20874 1.19827 1.45017 1.12601 1.61762 1.16670 1.17297 0.87337 0.94651 0.93685 1.20018 0.98242 1.04350 0.98719 1.25742 0.98261 1.05901 1.01152 1.83591 1.17133 1.56465 1.08602 1.24718 0.99759 1.20053 1.04588 0.92398 0.94421 0.93942 0.91360 0.95278 0.92628 0.77431 0.82768 0.78505 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.27 71.98 0.59 -5.02 15 2 C -0.12 -6.09 5.45 30.59 0.17 -5.93 15 3 C 0.29 14.79 2.21 44.24 0.10 14.89 15 4 H 0.00 -0.05 6.80 -2.39 -0.02 -0.06 15 5 C -0.55 -29.76 8.73 25.60 0.22 -29.53 15 6 H 0.06 3.15 7.74 -2.91 -0.02 3.12 15 7 C 0.02 1.00 5.29 84.66 0.45 1.45 15 8 N -0.91 -51.90 11.29 21.45 0.24 -51.65 15 9 Si 0.96 42.80 29.54 68.60 2.03 44.83 15 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 12 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 13 N -0.73 -31.21 5.23 -325.79 -1.71 -32.92 15 14 C 0.18 6.95 5.46 36.81 0.20 7.15 15 15 C -0.18 -5.34 10.14 21.30 0.22 -5.12 15 16 C -0.17 -4.39 11.22 66.73 0.75 -3.64 15 17 S 0.08 2.44 23.33 -56.49 -1.32 1.13 15 18 C -0.35 -13.38 7.86 66.80 0.53 -12.86 15 19 H 0.06 2.35 5.38 -2.39 -0.01 2.33 15 20 H 0.04 1.60 6.48 -2.38 -0.02 1.58 15 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.07 3.73 5.95 -2.38 -0.01 3.71 15 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.26 14.30 8.31 -92.71 -0.77 13.53 15 25 H 0.39 15.52 8.63 -92.71 -0.80 14.72 15 26 H 0.15 3.85 8.06 -2.91 -0.02 3.83 15 27 H 0.20 3.29 8.06 -2.91 -0.02 3.27 15 28 H 0.14 5.99 4.76 -2.91 -0.01 5.97 15 Total: -1.00 -58.79 241.78 2.84 -55.95 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.37 Total: 21.28 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 3.22 Total: -38.62 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.46 Total: -84.57 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.32 Total: 1.13 kcal Total: -58.79 2.84 -55.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085534607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.738 kcal (2) G-P(sol) polarization free energy of solvation -58.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds