Wall clock time and date at job start Mon Mar 30 2020 20:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46899 * 2 1 4 4 C 1.50695 * 109.47470 * 240.00252 * 2 1 3 5 5 H 1.07996 * 120.00024 * 240.00216 * 4 2 1 6 6 C 1.37888 * 120.00053 * 59.99610 * 4 2 1 7 7 N 1.31515 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46666 * 60.00338 * 8 6 4 10 10 H 1.48494 * 109.46762 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46996 * 300.00506 * 8 6 4 12 12 C 1.52998 * 109.47351 * 119.99961 * 2 1 3 13 13 N 1.46899 * 109.47280 * 175.45998 * 12 2 1 14 14 C 1.47475 * 111.00007 * 80.68784 * 13 12 2 15 15 C 1.53516 * 87.93369 * 138.70163 * 14 13 12 16 16 C 1.52992 * 114.16998 * 220.32858 * 15 14 13 17 17 C 1.52994 * 114.17024 * 87.62120 * 15 14 13 18 18 C 1.47477 * 110.99623 * 176.65981 * 13 12 2 19 19 H 1.08994 * 109.47513 * 297.50405 * 1 2 3 20 20 H 1.09003 * 109.47024 * 57.50200 * 1 2 3 21 21 H 1.09002 * 109.46958 * 177.49949 * 1 2 3 22 22 H 1.09004 * 109.47227 * 187.85992 * 3 2 1 23 23 H 1.08993 * 109.47333 * 307.86456 * 3 2 1 24 24 H 1.09007 * 109.46968 * 67.86793 * 3 2 1 25 25 H 0.96991 * 119.99869 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46778 * 295.46511 * 12 2 1 27 27 H 1.09004 * 109.46988 * 55.45706 * 12 2 1 28 28 H 1.09004 * 113.47588 * 253.46935 * 14 13 12 29 29 H 1.09003 * 113.47593 * 23.93427 * 14 13 12 30 30 H 1.09000 * 109.47340 * 153.83956 * 16 15 14 31 31 H 1.09002 * 109.47576 * 273.83988 * 16 15 14 32 32 H 1.09000 * 109.47595 * 33.84157 * 16 15 14 33 33 H 1.09002 * 109.47224 * 326.16096 * 17 15 14 34 34 H 1.09002 * 109.47112 * 86.15724 * 17 15 14 35 35 H 1.09001 * 109.47230 * 206.16495 * 17 15 14 36 36 H 1.09003 * 113.48035 * 336.05758 * 18 13 12 37 37 H 1.08997 * 113.48136 * 106.53155 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8270 -0.4197 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0400 -0.7212 1.2492 13 7 3.5049 -0.8169 1.1956 14 6 4.1331 0.4458 1.6267 15 6 5.1654 -0.3937 2.3923 16 6 5.5356 0.1687 3.7661 17 6 6.3796 -0.8070 1.5581 18 6 4.0392 -1.4366 2.4226 19 1 -0.3634 0.4745 0.9114 20 1 -0.3633 0.5521 -0.8668 21 1 -0.3633 -1.0267 -0.0448 22 1 3.1209 1.4458 -0.1405 23 1 1.5664 1.9953 -0.8112 24 1 1.7960 1.9141 0.9520 25 1 0.7089 1.1614 -3.4843 26 1 1.7445 -0.1626 2.1373 27 1 1.6117 -1.7227 1.2908 28 1 4.5629 1.0195 0.8055 29 1 3.4967 1.0483 2.2749 30 1 5.8683 -0.6428 4.4133 31 1 6.3382 0.8979 3.6560 32 1 4.6640 0.6517 4.2079 33 1 6.0712 -0.9752 0.5262 34 1 7.1282 -0.0153 1.5891 35 1 6.8042 -1.7249 1.9645 36 1 3.3778 -1.3364 3.2832 37 1 4.3895 -2.4583 2.2761 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306170708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:32:22 Heat of formation + Delta-G solvation = 8.506304 kcal Electronic energy + Delta-G solvation = -15107.928597 eV Core-core repulsion = 12885.410444 eV Total energy + Delta-G solvation = -2222.518154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.43203 -37.50623 -33.94413 -32.39074 -28.26138 -28.17768 -27.56710 -26.95986 -26.24975 -23.04200 -20.70745 -19.11943 -17.81838 -16.75695 -16.34227 -16.21539 -15.72089 -14.85932 -14.48345 -14.14309 -14.00421 -13.51418 -13.24458 -13.13517 -12.97049 -12.81310 -12.70148 -12.53611 -12.37909 -12.32851 -11.96931 -11.81665 -11.65218 -11.15209 -10.88329 -10.77021 -10.48206 -10.27219 -9.43441 -7.89919 -5.99254 1.43774 1.44591 1.51687 2.52262 3.29119 3.39482 3.45215 3.94077 4.32606 4.35534 4.37825 4.53756 4.61879 4.76712 4.81140 4.87201 4.87986 4.90794 5.00197 5.07710 5.10742 5.13754 5.20222 5.23061 5.29477 5.37346 5.48632 5.61616 5.71131 5.74481 5.82312 6.15653 6.25307 6.48326 6.67392 7.06510 7.64689 9.10312 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035113 B = 0.010036 C = 0.008790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.226593 B = 2789.307780 C = 3184.684713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.057 3.943 3 C -0.116 4.116 4 C -0.481 4.481 5 H 0.047 0.953 6 C 0.012 3.988 7 N -0.915 5.915 8 Si 0.940 3.060 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.280 1.280 12 C 0.050 3.950 13 N -0.471 5.471 14 C 0.015 3.985 15 C -0.088 4.088 16 C -0.127 4.127 17 C -0.116 4.116 18 C -0.001 4.001 19 H 0.025 0.975 20 H 0.058 0.942 21 H 0.021 0.979 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.017 0.983 25 H 0.253 0.747 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 -1.338 10.992 13.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.057 3.943 3 C -0.173 4.173 4 C -0.520 4.520 5 H 0.065 0.935 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.767 3.233 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.205 1.205 12 C -0.078 4.078 13 N -0.192 5.192 14 C -0.114 4.114 15 C -0.088 4.088 16 C -0.185 4.185 17 C -0.173 4.173 18 C -0.130 4.130 19 H 0.044 0.956 20 H 0.077 0.923 21 H 0.041 0.959 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.582 -1.530 10.165 12.773 hybrid contribution -0.455 -0.007 -0.507 0.681 sum 7.127 -1.537 9.658 12.101 Atomic orbital electron populations 1.21692 0.98318 0.98740 0.99467 1.18158 0.91712 0.92452 0.91997 1.21771 0.99377 0.98376 0.97809 1.21218 1.28778 1.11177 0.90788 0.93491 1.25529 0.95969 0.95935 1.01008 1.69967 1.38651 1.24165 1.22846 0.85906 0.78487 0.78777 0.80086 1.20399 1.21475 1.20548 1.22559 0.89367 0.98969 0.96941 1.68921 1.07287 1.10596 1.32399 1.23942 0.96245 0.93593 0.97660 1.22053 0.94256 0.95844 0.96691 1.21661 1.01685 1.01144 0.93974 1.21424 0.95521 1.01580 0.98806 1.23987 0.96584 0.99565 0.92833 0.95629 0.92316 0.95944 0.94755 0.93421 0.96429 0.93771 0.95659 0.93191 0.91976 0.92030 0.91023 0.91462 0.92764 0.94011 0.91467 0.91272 0.91382 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.21 71.98 0.59 -5.46 16 2 C 0.06 2.82 0.58 -52.93 -0.03 2.79 16 3 C -0.12 -5.61 6.92 71.98 0.50 -5.11 16 4 C -0.48 -26.59 7.57 25.60 0.19 -26.40 16 5 H 0.05 2.68 7.52 -2.91 -0.02 2.66 16 6 C 0.01 0.69 5.15 84.66 0.44 1.13 16 7 N -0.92 -52.64 9.47 21.45 0.20 -52.43 16 8 Si 0.94 45.40 29.54 68.60 2.03 47.43 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.05 2.11 3.86 86.30 0.33 2.45 16 13 N -0.47 -18.39 5.45 -927.74 -5.06 -23.44 16 14 C 0.01 0.50 4.58 83.58 0.38 0.88 16 15 C -0.09 -2.36 1.53 -51.84 -0.08 -2.44 16 16 C -0.13 -2.56 9.30 71.98 0.67 -1.89 16 17 C -0.12 -2.99 9.22 71.98 0.66 -2.32 16 18 C 0.00 -0.02 6.88 83.58 0.58 0.55 16 19 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.06 3.17 6.14 -2.39 -0.01 3.16 16 21 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.03 1.65 5.46 -2.39 -0.01 1.64 16 23 H 0.05 2.57 6.31 -2.39 -0.02 2.55 16 24 H 0.02 0.74 7.93 -2.38 -0.02 0.72 16 25 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.03 0.98 7.55 -2.39 -0.02 0.97 16 27 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.06 2.36 6.75 -2.39 -0.02 2.34 16 29 H 0.06 2.06 7.08 -2.39 -0.02 2.04 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.09 7.90 -2.39 -0.02 1.07 16 33 H 0.04 1.32 7.92 -2.39 -0.02 1.30 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 37 H 0.08 2.28 8.12 -2.39 -0.02 2.26 16 Total: -1.00 -59.43 281.39 2.41 -57.02 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.00 Total: 7.24 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 4.23 Total: -35.81 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -4.85 Total: -75.88 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -59.43 2.41 -57.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306170708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.530 kcal (2) G-P(sol) polarization free energy of solvation -59.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds