Wall clock time and date at job start Mon Mar 30 2020 20:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46629 * 2 1 4 4 C 1.52996 * 109.47204 * 240.00165 * 2 1 3 5 5 C 1.52994 * 109.47187 * 119.99946 * 2 1 3 6 6 C 1.53005 * 109.47170 * 99.71455 * 5 2 1 7 7 C 1.50703 * 109.47385 * 339.71427 * 5 2 1 8 8 H 1.07999 * 119.99923 * 243.97626 * 7 5 2 9 9 C 1.37881 * 119.99944 * 63.96949 * 7 5 2 10 10 N 1.31515 * 119.99489 * 24.52708 * 9 7 5 11 11 Si 1.86797 * 119.99975 * 204.52430 * 9 7 5 12 12 H 1.48502 * 109.47231 * 60.00098 * 11 9 7 13 13 H 1.48497 * 109.46692 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47320 * 299.99818 * 11 9 7 15 15 N 1.46904 * 109.47120 * 219.71617 * 5 2 1 16 16 C 1.46901 * 110.99694 * 293.51945 * 15 5 2 17 17 C 1.52995 * 117.49774 * 229.11422 * 16 15 5 18 18 C 1.53000 * 117.49721 * 160.45361 * 16 15 5 19 19 H 1.09000 * 109.47578 * 302.64220 * 1 2 3 20 20 H 1.08999 * 109.47091 * 62.64838 * 1 2 3 21 21 H 1.09007 * 109.46919 * 182.64382 * 1 2 3 22 22 H 1.09006 * 109.46928 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47181 * 299.99813 * 3 2 1 24 24 H 1.09002 * 109.47142 * 60.00454 * 3 2 1 25 25 H 1.09006 * 109.47114 * 306.11797 * 4 2 1 26 26 H 1.09001 * 109.46954 * 66.11704 * 4 2 1 27 27 H 1.08993 * 109.47112 * 186.11988 * 4 2 1 28 28 H 1.09002 * 109.46807 * 300.00046 * 6 5 2 29 29 H 1.09000 * 109.47043 * 179.97438 * 6 5 2 30 30 H 1.08999 * 109.46439 * 60.00096 * 6 5 2 31 31 H 0.96998 * 119.99683 * 179.97438 * 10 9 7 32 32 H 1.00893 * 110.99978 * 57.48005 * 15 5 2 33 33 H 1.08998 * 115.54898 * 14.79023 * 16 15 5 34 34 H 1.09000 * 117.50333 * 0.02562 * 17 16 15 35 35 H 1.09007 * 117.49774 * 145.02452 * 17 16 15 36 36 H 1.08998 * 117.50191 * 214.98342 * 18 16 15 37 37 H 1.09004 * 117.49619 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 2.4395 -2.1524 0.8844 7 6 0.9510 -0.7536 2.2904 8 1 1.0855 -0.2359 3.2287 9 6 -0.2170 -1.4439 2.0451 10 7 -0.2253 -2.4367 1.1826 11 14 -1.7877 -0.9691 2.9379 12 1 -2.1307 0.4405 2.6206 13 1 -2.8935 -1.8586 2.5010 14 1 -1.5872 -1.1121 4.4023 15 7 3.2077 -0.0080 1.7840 16 6 4.3440 -0.0887 0.8564 17 6 5.6979 -0.5078 1.4326 18 6 5.4602 0.9456 1.0151 19 1 -0.3634 0.5543 0.8653 20 1 -0.3633 0.4722 -0.9128 21 1 -0.3633 -1.0266 0.0474 22 1 3.1299 1.4426 0.0005 23 1 1.6765 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.5900 -1.7124 -1.3057 26 1 1.7689 -0.1480 -2.1358 27 1 3.1244 -0.8170 -1.1961 28 1 1.5731 -2.6815 0.4877 29 1 2.8033 -2.6661 1.7743 30 1 3.2272 -2.1289 0.1314 31 1 -1.0469 -2.9226 1.0103 32 1 2.9799 0.9521 1.9942 33 1 4.1033 -0.4183 -0.1543 34 1 5.7455 -0.7242 2.4999 35 1 6.3482 -1.1130 0.8009 36 1 5.9542 1.2960 0.1089 37 1 5.3516 1.6856 1.8081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:32:59 Heat of formation + Delta-G solvation = 59.182184 kcal Electronic energy + Delta-G solvation = -15772.277213 eV Core-core repulsion = 13551.956530 eV Total energy + Delta-G solvation = -2220.320683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.05934 -35.93249 -32.56282 -31.15778 -28.36286 -26.76728 -25.33505 -24.28205 -21.84562 -21.52774 -19.89248 -17.53259 -16.24737 -15.16242 -15.03976 -14.45562 -14.15228 -13.18397 -12.82535 -12.63614 -11.96187 -11.77113 -11.53796 -11.38470 -11.04394 -10.84019 -10.73655 -10.54272 -10.39432 -10.23055 -10.04710 -9.94936 -9.73478 -9.60507 -9.23893 -9.22344 -8.75013 -7.63286 -7.04721 -6.00424 -3.98240 3.29978 3.35952 3.40422 4.36917 4.44482 5.08851 5.10067 5.47552 5.56318 5.93070 6.00778 6.04747 6.05973 6.14777 6.23264 6.35573 6.48955 6.64498 6.67247 6.72056 6.78258 6.87620 7.08396 7.11006 7.22064 7.28844 7.34818 7.59413 7.65188 7.92773 7.95418 8.13178 8.55268 8.56302 8.71449 9.02003 9.57314 10.92859 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038468 B = 0.012051 C = 0.011424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.700660 B = 2322.851105 C = 2450.454108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.137 4.137 5 C 0.245 3.755 6 C -0.135 4.135 7 C -0.495 4.495 8 H 0.061 0.939 9 C 0.080 3.920 10 N -0.871 5.871 11 Si 0.877 3.123 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.278 1.278 15 N -0.652 5.652 16 C 0.030 3.970 17 C -0.180 4.180 18 C -0.207 4.207 19 H 0.050 0.950 20 H -0.004 1.004 21 H 0.117 0.883 22 H 0.052 0.948 23 H 0.033 0.967 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.026 0.974 30 H 0.004 0.996 31 H 0.260 0.740 32 H 0.330 0.670 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.831 3.836 -3.024 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.077 4.077 3 C -0.208 4.208 4 C -0.194 4.194 5 C 0.156 3.844 6 C -0.193 4.193 7 C -0.532 4.532 8 H 0.079 0.921 9 C -0.119 4.119 10 N -0.511 5.511 11 Si 0.704 3.296 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.204 1.204 15 N -0.283 5.283 16 C -0.081 4.081 17 C -0.219 4.219 18 C -0.246 4.246 19 H 0.069 0.931 20 H 0.015 0.985 21 H 0.135 0.865 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.045 0.955 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.896 3.165 -2.678 6.415 hybrid contribution -1.029 1.044 -0.255 1.488 sum 3.867 4.209 -2.933 6.424 Atomic orbital electron populations 1.22759 0.95043 1.07134 0.96808 1.21194 0.96938 0.92951 0.96626 1.22170 1.00337 0.98196 1.00071 1.22175 0.99318 1.01001 0.96880 1.18678 0.85615 0.90202 0.89913 1.22395 1.00800 0.98153 0.97915 1.20936 0.98705 1.31599 1.01968 0.92089 1.24734 0.98879 0.93640 0.94628 1.69855 1.26910 1.17796 1.36562 0.86911 0.83577 0.78976 0.80111 1.20073 1.21258 1.20360 1.60591 1.06705 1.18602 1.42363 1.22640 0.87687 1.00818 0.96912 1.23061 1.01106 0.96099 1.01625 1.23158 1.05776 0.93025 1.02592 0.93106 0.98461 0.86537 0.92941 0.94758 0.93188 0.91844 0.95545 0.93745 0.87111 0.95509 0.97677 0.92903 0.84939 0.87917 0.88940 0.90049 0.89913 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 6.68 37.16 0.25 -3.47 16 2 C -0.07 -1.62 0.64 -154.51 -0.10 -1.72 16 3 C -0.15 -2.91 7.11 37.16 0.26 -2.64 16 4 C -0.14 -2.76 7.03 37.16 0.26 -2.50 16 5 C 0.25 5.72 0.62 -132.75 -0.08 5.64 16 6 C -0.13 -3.25 6.59 37.16 0.24 -3.01 16 7 C -0.49 -12.87 7.22 -34.44 -0.25 -13.12 16 8 H 0.06 1.64 7.93 -52.49 -0.42 1.23 16 9 C 0.08 2.06 2.85 -17.82 -0.05 2.01 16 10 N -0.87 -22.57 8.23 55.43 0.46 -22.12 16 11 Si 0.88 20.37 28.56 -169.99 -4.85 15.52 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 N -0.65 -13.83 6.13 -94.21 -0.58 -14.41 16 16 C 0.03 0.56 2.71 -67.71 -0.18 0.37 16 17 C -0.18 -2.98 10.46 -26.70 -0.28 -3.26 16 18 C -0.21 -3.20 9.98 -26.69 -0.27 -3.47 16 19 H 0.05 1.23 5.79 -51.93 -0.30 0.93 16 20 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 21 H 0.12 2.92 4.20 -51.95 -0.22 2.70 16 22 H 0.05 0.95 4.74 -51.93 -0.25 0.70 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.98 7.53 -51.93 -0.39 0.58 16 25 H 0.06 1.36 6.86 -51.93 -0.36 1.00 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.85 4.36 -51.93 -0.23 0.62 16 28 H 0.11 2.86 4.66 -51.93 -0.24 2.62 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.00 0.10 5.11 -51.93 -0.27 -0.17 16 31 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.33 6.81 6.68 -39.30 -0.26 6.55 16 33 H 0.10 1.97 3.71 -51.93 -0.19 1.77 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 261.14 15.07 3.94 3.94 Total: -1.00 -25.39 261.14 -6.87 -32.26 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.63 Total: 9.98 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -0.19 Total: -25.17 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.12 Total: -36.52 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.85 Total: 15.52 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.39 -6.87 -32.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.440 kcal (2) G-P(sol) polarization free energy of solvation -25.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds