Wall clock time and date at job start Mon Mar 30 2020 20:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.46679 * 2 1 4 4 C 1.46896 * 110.99842 * 300.70551 * 3 2 1 5 5 C 1.52998 * 109.47243 * 294.60223 * 4 3 2 6 6 C 1.50704 * 109.47250 * 181.31996 * 5 4 3 7 7 H 1.08003 * 119.99711 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99953 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00518 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99652 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47112 * 59.99990 * 10 8 6 12 12 H 1.48507 * 109.47118 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47356 * 299.99708 * 10 8 6 14 14 C 1.46897 * 111.00519 * 64.66679 * 3 2 1 15 15 H 1.09005 * 109.46549 * 296.04319 * 14 3 2 16 16 C 1.52997 * 109.47381 * 176.04560 * 14 3 2 17 17 C 1.52995 * 109.47521 * 56.04112 * 14 3 2 18 18 C 1.52999 * 117.50029 * 180.02562 * 17 14 3 19 19 C 1.53005 * 60.03070 * 107.48031 * 18 17 14 20 20 H 1.09006 * 109.47310 * 306.63697 * 1 2 3 21 21 H 1.08994 * 109.47013 * 66.63957 * 1 2 3 22 22 H 1.09008 * 109.46996 * 186.64036 * 1 2 3 23 23 H 1.08995 * 109.47315 * 239.99527 * 2 1 3 24 24 H 1.09002 * 109.46689 * 119.99343 * 2 1 3 25 25 H 1.08997 * 109.47465 * 54.60855 * 4 3 2 26 26 H 1.09006 * 109.46953 * 174.60569 * 4 3 2 27 27 H 1.08994 * 109.47621 * 301.32141 * 5 4 3 28 28 H 1.09000 * 109.46670 * 61.32351 * 5 4 3 29 29 H 0.96993 * 120.00299 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.47060 * 179.97438 * 16 14 3 31 31 H 1.09000 * 109.47159 * 299.99915 * 16 14 3 32 32 H 1.09003 * 109.47232 * 59.99250 * 16 14 3 33 33 H 1.08999 * 115.56111 * 34.30970 * 17 14 3 34 34 H 1.09003 * 117.49895 * 214.97378 * 18 17 14 35 35 H 1.08996 * 117.49918 * 359.97438 * 18 17 14 36 36 H 1.08997 * 117.50239 * 107.50682 * 19 18 17 37 37 H 1.09000 * 117.49675 * 252.52241 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5347 2.1147 -1.1791 5 6 2.1392 1.5003 -2.4433 6 6 1.6674 2.2691 -3.6505 7 1 1.0032 3.1119 -3.5283 8 6 2.0837 1.8964 -4.9110 9 7 2.8920 0.8698 -5.0600 10 14 1.4994 2.8499 -6.4074 11 1 1.9306 4.2662 -6.2912 12 1 2.0860 2.2535 -7.6344 13 1 0.0178 2.7884 -6.4861 14 6 1.6418 2.0770 1.2395 15 1 0.5559 2.1522 1.2971 16 6 2.2512 3.4804 1.2462 17 6 2.1630 1.2889 2.4428 18 6 1.8695 1.8500 3.8356 19 6 1.1293 0.6055 3.3414 20 1 -0.3634 0.6133 0.8247 21 1 -0.3633 0.4075 -0.9434 22 1 -0.3633 -1.0208 0.1188 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 0.4479 2.0477 -1.2264 26 1 1.8314 3.1611 -1.1062 27 1 3.2266 1.5462 -2.3855 28 1 1.8234 0.4605 -2.5285 29 1 3.1851 0.6079 -5.9467 30 1 1.9705 3.9940 2.1657 31 1 3.3371 3.4052 1.1885 32 1 1.8799 4.0419 0.3889 33 1 3.1159 0.7808 2.2953 34 1 2.6295 1.7113 4.6046 35 1 1.3054 2.7808 3.8946 36 1 1.4023 -0.3519 3.7852 37 1 0.0783 0.7176 3.0749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324810708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:33:07 Heat of formation + Delta-G solvation = 15.823860 kcal Electronic energy + Delta-G solvation = -14568.613423 eV Core-core repulsion = 12346.412582 eV Total energy + Delta-G solvation = -2222.200841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.97762 -36.09232 -33.00387 -31.33356 -30.06652 -27.43030 -24.98430 -23.13022 -22.46961 -22.19008 -19.87700 -18.58470 -16.58209 -15.91677 -14.89582 -14.69562 -14.51948 -14.29619 -13.43976 -12.68327 -12.50240 -12.25705 -12.14082 -11.91236 -11.64236 -11.38955 -11.22325 -10.93316 -10.91366 -10.56964 -10.53039 -10.37554 -10.23605 -9.70197 -9.62606 -9.24737 -9.05813 -8.28251 -7.55384 -5.95470 -3.97596 3.35543 3.39894 3.42197 3.87341 4.39165 4.55143 4.85101 5.01113 5.13610 5.40154 5.44931 5.56363 5.63600 5.65459 5.66366 5.85683 5.88098 5.89980 5.97768 6.13872 6.16887 6.26464 6.37313 6.38743 6.47666 6.56761 6.68513 6.78265 7.09901 7.63244 7.69540 7.88248 7.98585 8.15509 8.49223 9.09846 9.65685 11.15911 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053420 B = 0.006661 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.023240 B = 4202.391838 C = 4417.684533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 N -0.530 5.530 4 C 0.056 3.944 5 C 0.029 3.971 6 C -0.521 4.521 7 H 0.052 0.948 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.108 3.892 15 H 0.035 0.965 16 C -0.143 4.143 17 C -0.133 4.133 18 C -0.181 4.181 19 C -0.185 4.185 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.022 0.978 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 0.470 14.529 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.076 4.076 3 N -0.254 5.254 4 C -0.071 4.071 5 C -0.008 4.008 6 C -0.560 4.560 7 H 0.070 0.930 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.204 1.204 14 C -0.001 4.001 15 H 0.053 0.947 16 C -0.201 4.201 17 C -0.151 4.151 18 C -0.218 4.218 19 C -0.222 4.222 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.472 0.362 14.362 14.577 hybrid contribution -1.239 0.451 -0.849 1.568 sum -3.711 0.813 13.513 14.037 Atomic orbital electron populations 1.22389 0.99137 1.01212 1.01960 1.22100 0.92360 0.90870 1.02271 1.62354 1.59447 1.02034 1.01527 1.22436 0.96710 0.97632 0.90313 1.19064 0.96719 0.95835 0.89169 1.21171 1.28841 1.14484 0.91487 0.92972 1.24980 0.95162 0.95165 0.98943 1.69960 1.33946 1.26512 1.22883 0.86684 0.78926 0.80235 0.82284 1.20262 1.21297 1.20353 1.21134 0.96403 0.93438 0.89127 0.94684 1.21852 1.02035 0.95221 1.00965 1.22317 1.00131 1.02284 0.90397 1.22916 1.03580 0.97710 0.97607 1.23022 0.97761 0.96568 1.04828 0.93349 0.91851 0.93007 0.90039 0.91665 0.95934 0.91844 0.95850 0.96541 0.92998 0.93053 0.91806 0.92128 0.87244 0.89112 0.89104 0.89183 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 9.17 37.16 0.34 -2.65 16 2 C 0.05 0.90 5.54 -3.82 -0.02 0.88 16 3 N -0.53 -9.75 4.58 -226.66 -1.04 -10.79 16 4 C 0.06 1.19 4.44 -3.83 -0.02 1.17 16 5 C 0.03 0.78 4.85 -27.88 -0.14 0.64 16 6 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 7 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.11 1.64 1.91 -67.72 -0.13 1.51 16 15 H 0.04 0.55 6.24 -51.93 -0.32 0.23 16 16 C -0.14 -2.07 8.83 37.16 0.33 -1.74 16 17 C -0.13 -1.73 3.73 -90.59 -0.34 -2.07 16 18 C -0.18 -1.95 9.73 -26.73 -0.26 -2.21 16 19 C -0.18 -2.08 10.06 -26.69 -0.27 -2.35 16 20 H 0.05 0.71 5.91 -51.93 -0.31 0.41 16 21 H 0.06 1.14 6.65 -51.93 -0.35 0.80 16 22 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 23 H 0.08 1.59 6.51 -51.93 -0.34 1.25 16 24 H 0.06 1.00 6.65 -51.93 -0.35 0.66 16 25 H 0.02 0.48 6.16 -51.93 -0.32 0.16 16 26 H 0.06 1.35 5.85 -51.93 -0.30 1.05 16 27 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.02 0.45 6.61 -51.93 -0.34 0.11 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.05 0.62 7.29 -51.93 -0.38 0.24 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.93 6.21 -51.93 -0.32 0.61 16 33 H 0.11 1.51 8.09 -51.93 -0.42 1.09 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.94 7.61 -51.93 -0.40 0.55 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.02 7.66 -51.93 -0.40 0.62 16 LS Contribution 285.74 15.07 4.31 4.31 Total: -1.00 -29.53 285.74 -8.12 -37.66 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.20 Total: -1.15 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -0.91 Total: -20.44 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.30 Total: -37.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.53 -8.12 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324810708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.481 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds