Wall clock time and date at job start Mon Mar 30 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 C 1.53781 * 113.61370 * 277.49817 * 15 13 12 17 17 C 1.53780 * 87.08210 * 220.01447 * 16 15 13 18 18 C 1.53005 * 113.61627 * 139.97734 * 17 16 15 19 19 C 1.53782 * 87.08073 * 25.43630 * 17 16 15 20 20 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 1.08999 * 112.85292 * 48.80461 * 15 13 12 25 25 H 1.08998 * 113.61711 * 334.56763 * 16 15 13 26 26 H 1.09005 * 113.61303 * 105.47202 * 16 15 13 27 27 H 1.09001 * 113.61932 * 270.88364 * 17 16 15 28 28 H 1.09005 * 109.47223 * 322.51330 * 18 17 16 29 29 H 1.09010 * 109.46928 * 82.50292 * 18 17 16 30 30 H 1.08996 * 109.47381 * 202.50502 * 18 17 16 31 31 H 1.09002 * 113.61524 * 220.02193 * 19 17 16 32 32 H 1.08997 * 113.61850 * 89.11160 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 6 4.2435 -0.7703 -3.5811 17 6 4.1872 -0.3495 -5.0592 18 6 5.3432 0.5593 -5.4822 19 6 2.8988 0.4144 -4.7112 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7006 1.1552 3.4844 24 1 2.1577 -1.4712 -3.8219 25 1 4.7858 -0.0684 -2.9476 26 1 4.5557 -1.8041 -3.4331 27 1 4.0296 -1.1823 -5.7446 28 1 5.5816 1.2459 -4.6698 29 1 6.2181 -0.0490 -5.7122 30 1 5.0536 1.1281 -6.3657 31 1 2.1254 0.3371 -5.4754 32 1 3.0734 1.4402 -4.3866 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308157708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:22 Heat of formation + Delta-G solvation = -104.281506 kcal Electronic energy + Delta-G solvation = -14214.921671 eV Core-core repulsion = 11753.960915 eV Total energy + Delta-G solvation = -2460.960757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64559 -39.48057 -37.39041 -35.34448 -31.90161 -30.87671 -27.50180 -26.66548 -26.11704 -23.17958 -21.25117 -20.29304 -18.84056 -18.45905 -17.36138 -16.90441 -16.35223 -16.23154 -14.98613 -14.56689 -14.27359 -14.11125 -13.73482 -13.47849 -13.30973 -13.16640 -12.92336 -12.83477 -12.42772 -12.25130 -12.15606 -11.82301 -11.60211 -11.51179 -11.14801 -11.07180 -10.96234 -10.62108 -8.30913 -6.48367 1.32183 1.40660 1.41796 1.55823 2.06191 2.41946 2.99506 3.46185 3.58284 3.75807 3.85071 4.18310 4.47823 4.50728 4.63558 4.74199 4.77051 4.80626 4.83261 4.89623 4.92901 5.11237 5.14697 5.18832 5.38091 5.46407 5.59866 5.60306 5.90132 6.08103 6.57743 6.97605 7.24390 8.77284 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.050932 B = 0.006938 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.619997 B = 4035.028081 C = 4315.857360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.067 0.933 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.986 3.014 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.270 1.270 12 O -0.364 6.364 13 C 0.451 3.549 14 O -0.558 6.558 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.094 4.094 18 C -0.143 4.143 19 C -0.118 4.118 20 H 0.022 0.978 21 H 0.047 0.953 22 H 0.081 0.919 23 H 0.271 0.729 24 H 0.145 0.855 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -4.725 -13.218 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.160 3.840 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.085 0.915 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.808 3.192 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.195 1.195 12 O -0.280 6.280 13 C 0.296 3.704 14 O -0.450 6.450 15 C -0.135 4.135 16 C -0.157 4.157 17 C -0.112 4.112 18 C -0.200 4.200 19 C -0.156 4.156 20 H 0.041 0.959 21 H 0.066 0.934 22 H 0.100 0.900 23 H 0.081 0.919 24 H 0.163 0.837 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.674 -4.262 -13.028 14.836 hybrid contribution -0.195 0.293 1.187 1.238 sum 5.479 -3.970 -11.841 13.638 Atomic orbital electron populations 1.21976 0.96750 1.00427 1.00761 1.20346 0.92083 0.91970 0.79556 0.97889 1.21331 1.33324 1.13935 0.89964 0.91455 1.25880 0.94647 0.95694 1.02270 1.70027 1.36609 1.23804 1.25219 0.85094 0.78392 0.78395 0.77269 1.18651 1.20043 1.19515 1.86491 1.75985 1.43876 1.21644 1.24612 0.73211 0.85791 0.86783 1.90550 1.50332 1.18789 1.85349 1.22825 0.99906 1.02191 0.88575 1.23016 0.91126 1.03409 0.98168 1.22457 0.94454 0.99200 0.95052 1.21731 0.97767 0.99183 1.01289 1.23034 0.99454 0.97768 0.95309 0.95932 0.93427 0.90028 0.91943 0.83723 0.91620 0.88516 0.85879 0.94077 0.90939 0.91312 0.88891 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.57 9.32 71.98 0.67 -6.90 16 2 C 0.21 12.25 2.56 29.85 0.08 12.33 16 3 H 0.00 0.21 7.16 -2.38 -0.02 0.19 16 4 C -0.55 -31.99 8.90 25.60 0.23 -31.77 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.83 11.31 21.45 0.24 -53.59 16 8 Si 0.99 43.43 29.54 68.60 2.03 45.46 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 O -0.36 -18.35 9.86 -51.37 -0.51 -18.86 16 13 C 0.45 19.86 7.46 71.23 0.53 20.39 16 14 O -0.56 -28.30 15.12 21.95 0.33 -27.97 16 15 C -0.12 -3.43 4.26 -11.01 -0.05 -3.48 16 16 C -0.12 -2.98 7.18 31.12 0.22 -2.76 16 17 C -0.09 -1.75 4.36 -10.27 -0.04 -1.79 16 18 C -0.14 -2.43 9.71 71.98 0.70 -1.73 16 19 C -0.12 -2.93 6.97 31.12 0.22 -2.71 16 20 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 21 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.08 4.65 6.06 -2.38 -0.01 4.64 16 23 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 25 H 0.07 1.91 7.91 -2.39 -0.02 1.89 16 26 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 27 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 0.83 7.94 -2.38 -0.02 0.82 16 29 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 2.13 7.39 -2.39 -0.02 2.11 16 Total: -1.00 -68.61 270.89 6.18 -62.43 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.09 Total: 9.69 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 3.00 Total: -17.16 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.24 Total: -53.59 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.17 Total: -46.82 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -68.61 6.18 -62.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308157708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.851 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds