Wall clock time and date at job start Mon Mar 30 2020 20:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 112.85174 * 2 1 4 4 C 1.53782 * 113.61287 * 131.30209 * 2 1 3 5 5 C 1.53788 * 87.07791 * 139.98199 * 4 2 1 6 6 C 1.53777 * 113.61423 * 228.80413 * 2 1 3 7 7 H 1.08999 * 113.61156 * 334.64885 * 6 2 1 8 8 N 1.46895 * 113.62179 * 105.47168 * 6 2 1 9 9 C 1.46893 * 111.00318 * 205.00006 * 8 6 2 10 10 C 1.50708 * 109.47146 * 179.97438 * 9 8 6 11 11 O 1.21288 * 119.99815 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99719 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99349 * 180.02562 * 12 10 9 14 14 H 1.07991 * 120.00515 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99490 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00236 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99845 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00316 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00267 * 17 15 13 20 20 H 1.48504 * 109.46913 * 150.00066 * 17 15 13 21 21 H 1.08992 * 109.47637 * 191.19933 * 1 2 3 22 22 H 1.09003 * 109.47436 * 311.20122 * 1 2 3 23 23 H 1.09008 * 109.47236 * 71.19550 * 1 2 3 24 24 H 1.08997 * 113.61819 * 254.52670 * 4 2 1 25 25 H 1.08995 * 113.61415 * 25.43709 * 4 2 1 26 26 H 1.08998 * 113.61058 * 220.02030 * 5 4 2 27 27 H 1.09001 * 113.61626 * 89.11774 * 5 4 2 28 28 H 1.00908 * 110.99391 * 328.95168 * 8 6 2 29 29 H 1.09002 * 109.47091 * 59.99845 * 9 8 6 30 30 H 1.09000 * 109.47343 * 299.99463 * 9 8 6 31 31 H 0.96996 * 120.00564 * 359.97438 * 12 10 9 32 32 H 0.97001 * 119.99781 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1459 -0.9300 1.0585 5 6 3.1923 -1.3136 -0.0012 6 6 2.1459 -0.9280 -1.0602 7 1 1.4938 -1.7514 -1.3516 8 7 2.7107 -0.2125 -2.2121 9 6 2.7357 -1.0705 -3.4042 10 6 3.3196 -0.3037 -4.5628 11 8 3.6789 0.8447 -4.4106 12 7 3.4414 -0.8938 -5.7684 13 6 3.9730 -0.1963 -6.8223 14 1 4.2937 0.8259 -6.6865 15 6 4.0990 -0.8048 -8.0651 16 7 3.7092 -2.0489 -8.2302 17 14 4.8227 0.1456 -9.5013 18 1 3.7345 0.8449 -10.2307 19 1 5.7986 1.1430 -8.9933 20 1 5.5103 -0.7956 -10.4215 21 1 -0.3634 -1.0080 0.1996 22 1 -0.3634 0.6769 0.7732 23 1 -0.3634 0.3313 -0.9729 24 1 2.5650 -0.4006 1.9142 25 1 1.4945 -1.7548 1.3473 26 1 3.4442 -2.3740 -0.0022 27 1 4.0711 -0.6687 -0.0006 28 1 2.2034 0.6412 -2.3916 29 1 1.7202 -1.3814 -3.6495 30 1 3.3472 -1.9507 -3.2056 31 1 3.1536 -1.8120 -5.8903 32 1 3.7969 -2.4735 -9.0979 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308206708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:52 Heat of formation + Delta-G solvation = -26.727300 kcal Electronic energy + Delta-G solvation = -13816.191709 eV Core-core repulsion = 11390.886706 eV Total energy + Delta-G solvation = -2425.305003 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.29579 -37.97345 -34.14389 -33.28969 -31.16836 -29.78951 -26.99767 -24.49248 -23.30839 -22.35182 -19.63793 -18.94761 -17.82446 -16.39991 -15.27299 -14.99193 -14.68077 -14.26181 -14.00436 -13.64708 -13.20236 -13.08216 -12.76378 -12.27765 -11.63750 -11.53380 -11.47863 -11.20994 -11.02587 -10.81772 -10.37514 -10.30334 -10.18610 -10.05189 -9.48161 -8.39041 -7.99230 -7.91923 -6.38995 -3.79711 3.19848 3.28153 3.34542 3.94970 4.15391 4.42295 4.57386 4.65881 4.93052 4.98491 5.25301 5.31099 5.39167 5.50389 5.59017 5.68579 5.81667 5.85335 5.91909 6.02829 6.05828 6.13091 6.29286 6.40092 6.50790 7.39230 7.57816 7.75961 8.09727 8.64735 9.20837 9.57797 10.09556 10.78889 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.073016 B = 0.005382 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.385363 B = 5201.362901 C = 5248.216754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.138 4.138 5 C -0.128 4.128 6 C 0.062 3.938 7 H 0.069 0.931 8 N -0.657 5.657 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.565 5.565 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.269 1.269 20 H -0.284 1.284 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.349 0.651 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.392 0.608 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 -1.263 13.269 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 H 0.114 0.886 4 C -0.176 4.176 5 C -0.167 4.167 6 C -0.049 4.049 7 H 0.087 0.913 8 N -0.289 5.289 9 C -0.083 4.083 10 C 0.227 3.773 11 O -0.468 6.468 12 N -0.202 5.202 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.194 1.194 20 H -0.209 1.209 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.169 0.831 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.225 0.775 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.524 -0.738 13.344 14.110 hybrid contribution -0.775 -0.296 -1.164 1.430 sum -5.299 -1.034 12.180 13.323 Atomic orbital electron populations 1.21764 0.95167 1.01542 1.01693 1.22838 0.95114 0.99313 0.96424 0.88552 1.22836 0.98742 0.99216 0.96760 1.23011 0.97752 1.01075 0.94820 1.23163 0.95373 0.96330 0.89987 0.91291 1.60257 1.58101 1.07115 1.03439 1.21733 0.99378 0.96636 0.90553 1.19861 0.85316 0.88230 0.83915 1.90515 1.54260 1.18317 1.83682 1.41873 1.55329 1.14981 1.07989 1.19712 1.37054 0.98551 0.87544 0.87944 1.25261 0.97778 0.95977 0.98951 1.69617 1.47786 1.11790 1.25241 0.85855 0.79079 0.78977 0.80359 1.20445 1.19401 1.20932 0.92765 0.92669 0.92617 0.91497 0.90484 0.92011 0.89257 0.83099 0.94012 0.89714 0.77471 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.71 37.16 0.36 -1.06 16 2 C -0.12 -1.33 3.93 -89.81 -0.35 -1.68 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.14 -1.39 7.63 -25.91 -0.20 -1.59 16 5 C -0.13 -1.57 7.88 -25.91 -0.20 -1.77 16 6 C 0.06 0.82 3.70 -66.90 -0.25 0.58 16 7 H 0.07 0.89 7.82 -51.93 -0.41 0.48 16 8 N -0.66 -11.22 6.18 -107.14 -0.66 -11.88 16 9 C 0.05 0.92 6.01 -4.98 -0.03 0.89 16 10 C 0.44 10.76 7.82 -10.98 -0.09 10.68 16 11 O -0.58 -16.30 15.78 5.55 0.09 -16.21 16 12 N -0.56 -14.69 5.29 -10.96 -0.06 -14.75 16 13 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 14 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 17 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H 0.05 0.50 7.94 -51.93 -0.41 0.08 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.70 7.96 -51.93 -0.41 0.29 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.35 6.13 8.24 -39.29 -0.32 5.81 16 29 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.39 9.74 7.90 -40.82 -0.32 9.41 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 273.50 15.07 4.12 4.12 Total: -1.00 -30.74 273.50 -6.58 -37.32 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.77 Total: 11.42 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.00 Total: -2.11 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.00 Total: -50.83 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.09 Total: -16.21 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.74 -6.58 -37.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308206708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.595 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds