Wall clock time and date at job start Mon Mar 30 2020 20:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47448 * 2 1 4 4 C 1.53002 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50088 * 55.06438 * 4 3 2 6 6 C 1.53048 * 109.49615 * 175.16334 * 4 3 2 7 7 C 1.53040 * 109.53407 * 181.31793 * 6 4 3 8 8 H 1.09005 * 109.52126 * 178.66302 * 7 6 4 9 9 N 1.46898 * 109.50276 * 58.58417 * 7 6 4 10 10 C 1.53190 * 109.31119 * 298.62862 * 7 6 4 11 11 N 1.46927 * 108.77502 * 54.63902 * 10 7 6 12 12 C 1.36938 * 120.62757 * 126.36451 * 11 10 7 13 13 H 1.08001 * 120.00392 * 331.84685 * 12 11 10 14 14 C 1.38811 * 119.99469 * 151.84451 * 12 11 10 15 15 N 1.31620 * 120.00403 * 343.07872 * 14 12 11 16 16 Si 1.86800 * 119.99933 * 163.07479 * 14 12 11 17 17 H 1.48498 * 109.47007 * 60.00030 * 16 14 12 18 18 H 1.48499 * 109.47349 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47305 * 300.00182 * 16 14 12 20 20 C 1.46925 * 118.74116 * 306.39214 * 11 10 7 21 21 H 1.09006 * 109.46781 * 300.00252 * 1 2 3 22 22 H 1.08998 * 109.47089 * 59.99861 * 1 2 3 23 23 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46781 * 239.99748 * 2 1 3 25 25 H 1.08998 * 109.47089 * 120.00139 * 2 1 3 26 26 H 1.09007 * 109.47202 * 300.00227 * 3 2 1 27 27 H 1.09006 * 109.47335 * 60.00088 * 3 2 1 28 28 H 1.09004 * 109.45680 * 301.33269 * 6 4 3 29 29 H 1.08993 * 109.46111 * 61.29304 * 6 4 3 30 30 H 1.00899 * 111.00397 * 180.16193 * 9 7 6 31 31 H 1.00897 * 110.99606 * 304.11911 * 9 7 6 32 32 H 1.08997 * 109.59108 * 294.85140 * 10 7 6 33 33 H 1.09002 * 109.70133 * 174.49436 * 10 7 6 34 34 H 0.97001 * 120.00369 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.58402 * 293.82163 * 20 11 10 36 36 H 1.08994 * 109.58567 * 173.39445 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9336 0.8540 -0.8432 6 6 4.0809 2.8799 -0.1223 7 6 5.6109 2.8782 -0.1561 8 1 5.9739 3.9000 -0.2666 9 7 6.0755 2.0676 -1.2897 10 6 6.1458 2.2840 1.1507 11 7 5.5452 0.9577 1.3479 12 6 6.3343 -0.1403 1.5643 13 1 7.3365 -0.1726 1.1633 14 6 5.8459 -1.2119 2.2991 15 7 4.7831 -1.0581 3.0603 16 14 6.6968 -2.8723 2.2077 17 1 8.1025 -2.7339 2.6660 18 1 5.9857 -3.8417 3.0794 19 1 6.6792 -3.3611 0.8055 20 6 4.0819 0.8318 1.3078 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.6979 3.3248 -1.0407 29 1 3.7371 3.4610 0.7333 30 1 7.0834 2.0488 -1.3318 31 1 5.6980 1.1330 -1.2446 32 1 5.8785 2.9338 1.9840 33 1 7.2303 2.1894 1.0945 34 1 4.4420 -1.8069 3.5741 35 1 3.6462 1.3632 2.1540 36 1 3.8044 -0.2212 1.3529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108005708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:12 Heat of formation + Delta-G solvation = -4.994718 kcal Electronic energy + Delta-G solvation = -15223.816889 eV Core-core repulsion = 12935.287377 eV Total energy + Delta-G solvation = -2288.529513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.40323 -34.84819 -33.63571 -31.15599 -30.49131 -27.69332 -25.61658 -25.28581 -22.02385 -21.46364 -20.03216 -18.36530 -16.87137 -15.30926 -14.91711 -14.46466 -14.10468 -13.85484 -13.28288 -13.21135 -13.06053 -12.53581 -11.96855 -11.78315 -11.52530 -11.21467 -10.99586 -10.85642 -10.70301 -10.62953 -10.35453 -10.20207 -10.03069 -9.79441 -9.38847 -9.21789 -8.51889 -8.04564 -6.63266 -5.80180 -3.24003 3.36000 3.42151 3.43067 4.47026 5.23047 5.30197 5.38609 5.45843 5.48517 5.56672 5.73675 5.81193 5.82616 6.00099 6.22582 6.23515 6.24805 6.27316 6.44930 6.51927 6.61531 6.65325 6.74312 6.78986 6.82963 6.89941 7.05705 7.44497 7.69309 7.77485 7.86556 8.14881 8.43788 9.19784 9.82916 10.40255 11.27046 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.013233 C = 0.009229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.710160 B = 2115.389592 C = 3033.037134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.105 4.105 4 C -0.115 4.115 5 H 0.065 0.935 6 C -0.096 4.096 7 C 0.072 3.928 8 H 0.064 0.936 9 N -0.841 5.841 10 C 0.111 3.889 11 N -0.591 5.591 12 C -0.257 4.257 13 H 0.062 0.938 14 C 0.005 3.995 15 N -0.900 5.900 16 Si 0.901 3.099 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.177 3.823 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.328 0.672 31 H 0.348 0.652 32 H 0.016 0.984 33 H 0.049 0.951 34 H 0.254 0.746 35 H 0.014 0.986 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 4.251 -5.716 8.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.143 4.143 4 C -0.135 4.135 5 H 0.083 0.917 6 C -0.134 4.134 7 C -0.042 4.042 8 H 0.082 0.918 9 N -0.370 5.370 10 C -0.017 4.017 11 N -0.313 5.313 12 C -0.386 4.386 13 H 0.080 0.920 14 C -0.194 4.194 15 N -0.544 5.544 16 Si 0.731 3.269 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.051 3.949 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.034 0.966 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.517 4.648 -6.040 8.859 hybrid contribution 0.884 -1.441 0.886 1.909 sum -3.634 3.206 -5.154 7.074 Atomic orbital electron populations 1.21770 0.96879 1.00902 1.01062 1.21569 0.94647 0.97564 1.02690 1.21528 0.95952 0.96233 1.00581 1.21862 0.93702 0.96139 1.01787 0.91665 1.21441 0.94617 0.97276 1.00107 1.21850 0.95472 0.96052 0.90815 0.91820 1.59236 1.13360 1.19917 1.44507 1.21736 0.96448 0.88643 0.94857 1.44050 1.01935 1.02010 1.83333 1.19106 0.98008 0.94149 1.27375 0.91996 1.25036 0.98480 0.99553 0.96289 1.70028 1.25564 1.30430 1.28345 0.86401 0.78934 0.84077 0.77530 1.20979 1.21610 1.20969 1.20896 0.82564 1.01056 0.90370 0.93066 0.93448 0.93319 0.92544 0.90830 0.93279 0.92651 0.93128 0.92769 0.86139 0.83695 0.96589 0.93212 0.93576 0.96791 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.13 -2.06 5.69 -26.74 -0.15 -2.21 16 3 C -0.10 -1.73 4.69 -26.73 -0.13 -1.85 16 4 C -0.11 -2.17 2.02 -90.49 -0.18 -2.36 16 5 H 0.07 1.30 6.49 -51.93 -0.34 0.97 16 6 C -0.10 -1.71 4.89 -26.69 -0.13 -1.84 16 7 C 0.07 1.29 3.71 -67.59 -0.25 1.04 16 8 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 9 N -0.84 -14.83 9.22 -4.56 -0.04 -14.87 16 10 C 0.11 2.36 6.12 -3.71 -0.02 2.33 16 11 N -0.59 -14.51 2.57 -172.32 -0.44 -14.95 16 12 C -0.26 -6.93 9.58 -15.06 -0.14 -7.08 16 13 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 14 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 15 N -0.90 -25.82 11.20 55.49 0.62 -25.20 16 16 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.18 4.13 4.19 -3.71 -0.02 4.12 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.37 6.70 -51.93 -0.35 1.02 16 26 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.33 5.39 9.04 -39.29 -0.36 5.04 16 31 H 0.35 6.77 6.55 -39.29 -0.26 6.51 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 2.33 4.78 -51.93 -0.25 2.09 16 LS Contribution 276.86 15.07 4.17 4.17 Total: -1.00 -27.82 276.86 -7.62 -35.44 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.16 Total: 8.30 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.74 Total: -9.41 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.14 Total: -55.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.82 -7.62 -35.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.440 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds